About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_017295-T1
OS493_017296-T1
OS493_017297-T1HOMEOBOX PROTEIN EMX-RELATED
OS493_017298-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_017299-T1PROTEIN O-MANNOSYL-TRANSFERASE TMTC2
OS493_017300-T1E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED
OS493_017301-T1
OS493_017302-T1GAMMA TUBULIN COMPLEX PROTEIN
OS493_017303-T1METHYL-CPG-BINDING PROTEIN
OS493_017304-T1OS01G0253100 PROTEIN
OS493_017305-T1TUBBY-RELATED
OS493_017306-T1TUBBY-RELATED
OS493_017307-T1
OS493_017308-T1
OS493_017309-T1
OS493_017310-T1CUB DOMAIN-CONTAINING PROTEIN
OS493_017311-T1
OS493_017312-T1
OS493_017313-T1CATALASE
OS493_017314-T1TRANSIENT RECEPTOR POTENTIAL CHANNEL
OS493_017315-T1DED DOMAIN-CONTAINING PROTEIN
OS493_017316-T1
OS493_017317-T1HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED
OS493_017318-T1PROTEIN-TYROSINE SULFOTRANSFERASE 2
OS493_017319-T1
OS493_017320-T1CYTOCHROME P450 FAMILY 3
OS493_017321-T1CYTOCHROME P450 FAMILY 3
OS493_017322-T1CYTOCHROME P450 FAMILY 3
OS493_017323-T1CYTOCHROME P450 FAMILY 3
OS493_017324-T1
OS493_017325-T1CYTOCHROME P450 FAMILY 3
OS493_017326-T1CATALASE
OS493_017327-T1ARMADILLO-TYPE FOLD-RELATED
OS493_017328-T1ARMADILLO-TYPE FOLD-RELATED
OS493_017329-T1
OS493_017330-T1SERINE/THREONINE-PROTEIN KINASE
OS493_017331-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_017332-T1
OS493_017333-T1TETRASPANIN
OS493_017334-T1TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 13
OS493_017335-T1TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 13
OS493_017336-T1GEO09659P1
OS493_017337-T1
OS493_017338-T1DEOXYCYTIDYLATE DEAMINASE-RELATED
OS493_017339-T1DEOXYCYTIDYLATE DEAMINASE-RELATED
OS493_017340-T1
OS493_017341-T1CALCIUM-RESPONSIVE TRANSCRIPTION FACTOR
OS493_017342-T1
OS493_017343-T1
OS493_017344-T1CYCLIC NUCLEOTIDE PHOSPHODIESTERASE
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