About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_006934-T1-
OS493_006935-T1CELL DEATH ACTIVATOR CIDE
OS493_006936-T1DNA HELICASE RECQ FAMILY MEMBER
OS493_006937-T1-
OS493_006938-T1P-LOOP CONTAINING NUCLEOTIDE TRIPHOSPHATE HYDROLASE
OS493_006939-T1SERINE-THREONINE PROTEIN KINASE
OS493_006940-T1SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED
OS493_006941-T1-
OS493_006942-T1-
OS493_006944-T1SENTRIN-SPECIFIC PROTEASE
OS493_006945-T1-
OS493_006946-T1-
OS493_006947-T1METABOTROPIC GLUTAMATE RECEPTOR
OS493_006948-T1SI:CH211-189E2.2
OS493_006949-T1GLUTATHIONE S-TRANSFERASE KAPPA
OS493_006950-T1ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 13B
OS493_006951-T1TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3-RELATED
OS493_006952-T1ALCOHOL DEHYDROGENASE RELATED
OS493_006953-T1ZINC FINGER MYND DOMAIN-CONTAINING
OS493_006954-T1ZINC FINGER MYND DOMAIN-CONTAINING
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