Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_017447-T1 | |
OS493_017448-T1 | P-TYPE CATION-TRANSPORTING ATPASE |
OS493_017449-T1 | P-TYPE CATION-TRANSPORTING ATPASE |
OS493_017450-T1 | ATP7, ISOFORM B |
OS493_017451-T1 | |
OS493_017452-T1 | DEADENYLATION COMPLEX SUBUNIT PAN3 |
OS493_017453-T1 | DEADENYLATION COMPLEX SUBUNIT PAN3 |
OS493_017454-T1 | |
OS493_017455-T1 | ENDOSOMAL/LYSOSOMAL POTASSIUM CHANNEL TMEM175 |
OS493_017456-T1 | MOLTING PROTEIN MLT-4 |
OS493_017457-T1 | |
OS493_017458-T1 | ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN |
OS493_017459-T1 | FIBROBLAST GROWTH FACTOR |
OS493_017460-T1 | |
OS493_017461-T1 | |
OS493_017463-T1 | |
OS493_017464-T1 | |
OS493_017467-T1 | |
OS493_017468-T1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
OS493_017469-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_017470-T1 | PROTEIN SIDEKICK |
OS493_017471-T1 | UNCHARACTERIZED |
OS493_017472-T1 | |
OS493_017473-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_017474-T1 | |
OS493_017475-T1 | |
OS493_017476-T1 | TITIN |
OS493_017477-T1 | COLLAGEN ALPHA |
OS493_017478-T1 | VILLIN |
OS493_017479-T1 | VILLIN |
OS493_017480-T1 | TRANSMEMBRANE 9 SUPERFAMILY PROTEIN |
OS493_017482-T1 | PAK1 INTERACTING PROTEIN 1 |
OS493_017483-T1 | PAIRED BOX PROTEIN PAX-6-RELATED-RELATED |
OS493_017484-T1 | HOMEOBOX PROTEIN ARISTALESS |
OS493_017485-T1 | DIENCEPHALON/MESENCEPHALON HOMEOBOX PROTEIN 1 |
OS493_017486-T1 | HOMEOBOX PROTEIN ARISTALESS |
OS493_017487-T1 | |
OS493_017488-T1 | DIENCEPHALON/MESENCEPHALON HOMEOBOX PROTEIN 1 |
OS493_017489-T1 | DIENCEPHALON/MESENCEPHALON HOMEOBOX PROTEIN 1 |
OS493_017490-T1 | DIENCEPHALON/MESENCEPHALON HOMEOBOX PROTEIN 1 |
OS493_017491-T1 | DIENCEPHALON/MESENCEPHALON HOMEOBOX PROTEIN 1 |
OS493_017492-T1 | DIENCEPHALON/MESENCEPHALON HOMEOBOX PROTEIN 1 |
OS493_017494-T1 | PITUITARY HOMEOBOX HOMOLOG PTX1 |
OS493_017496-T1 | |
OS493_017497-T1 | PROTEIN SIDEKICK |
OS493_017498-T1 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED |
OS493_017499-T1 | |
OS493_017500-T1 | |
OS493_017501-T1 | ALPHA- 1,3 -FUCOSYLTRANSFERASE |
OS493_017502-T1 | MORTALITY FACTOR 4-LIKE PROTEIN |