About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_017447-T1
OS493_017448-T1P-TYPE CATION-TRANSPORTING ATPASE
OS493_017449-T1P-TYPE CATION-TRANSPORTING ATPASE
OS493_017450-T1ATP7, ISOFORM B
OS493_017451-T1
OS493_017452-T1DEADENYLATION COMPLEX SUBUNIT PAN3
OS493_017453-T1DEADENYLATION COMPLEX SUBUNIT PAN3
OS493_017454-T1
OS493_017455-T1ENDOSOMAL/LYSOSOMAL POTASSIUM CHANNEL TMEM175
OS493_017456-T1MOLTING PROTEIN MLT-4
OS493_017457-T1
OS493_017458-T1ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN
OS493_017459-T1FIBROBLAST GROWTH FACTOR
OS493_017460-T1
OS493_017461-T1
OS493_017463-T1
OS493_017464-T1
OS493_017467-T1
OS493_017468-T1ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
OS493_017469-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_017470-T1PROTEIN SIDEKICK
OS493_017471-T1UNCHARACTERIZED
OS493_017472-T1
OS493_017473-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_017474-T1
OS493_017475-T1
OS493_017476-T1TITIN
OS493_017477-T1COLLAGEN ALPHA
OS493_017478-T1VILLIN
OS493_017479-T1VILLIN
OS493_017480-T1TRANSMEMBRANE 9 SUPERFAMILY PROTEIN
OS493_017482-T1PAK1 INTERACTING PROTEIN 1
OS493_017483-T1PAIRED BOX PROTEIN PAX-6-RELATED-RELATED
OS493_017484-T1HOMEOBOX PROTEIN ARISTALESS
OS493_017485-T1DIENCEPHALON/MESENCEPHALON HOMEOBOX PROTEIN 1
OS493_017486-T1HOMEOBOX PROTEIN ARISTALESS
OS493_017487-T1
OS493_017488-T1DIENCEPHALON/MESENCEPHALON HOMEOBOX PROTEIN 1
OS493_017489-T1DIENCEPHALON/MESENCEPHALON HOMEOBOX PROTEIN 1
OS493_017490-T1DIENCEPHALON/MESENCEPHALON HOMEOBOX PROTEIN 1
OS493_017491-T1DIENCEPHALON/MESENCEPHALON HOMEOBOX PROTEIN 1
OS493_017492-T1DIENCEPHALON/MESENCEPHALON HOMEOBOX PROTEIN 1
OS493_017494-T1PITUITARY HOMEOBOX HOMOLOG PTX1
OS493_017496-T1
OS493_017497-T1PROTEIN SIDEKICK
OS493_017498-T1KUNITZ-TYPE PROTEASE INHIBITOR-RELATED
OS493_017499-T1
OS493_017500-T1
OS493_017501-T1ALPHA- 1,3 -FUCOSYLTRANSFERASE
OS493_017502-T1MORTALITY FACTOR 4-LIKE PROTEIN
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