About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_017778-T1
OS493_017779-T1TRANSGELIN
OS493_017780-T1SMALL VCP/P97-INTERACTING PROTEIN
OS493_017781-T1ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED
OS493_017782-T1ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED
OS493_017783-T1SYNAPTONEMAL COMPLEX PROTEIN 1
OS493_017784-T1CENTROSOMAL PROTEIN 2
OS493_017785-T1N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE
OS493_017786-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I
OS493_017787-T1SPLICING FACTOR YJU2
OS493_017788-T1DOCKING PROTEIN RELATED
OS493_017789-T1
OS493_017790-T1CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE
OS493_017791-T1
OS493_017792-T1
OS493_017793-T1DELTA(14)-STEROL REDUCTASE
OS493_017794-T1PHOSPHOGLYCOLATE PHOSPHATASE
OS493_017795-T1PROTEIN STPG4
OS493_017796-T1SHIPPO-1-RELATED
OS493_017797-T1
OS493_017798-T1SYNAPTOTAGMIN
OS493_017799-T1ZGC:174356
OS493_017800-T1
OS493_017801-T1
OS493_017802-T1
OS493_017803-T1
OS493_017804-T1
OS493_017805-T1SYNAPTOTAGMIN
OS493_017806-T1PX SERINE/THREONINE KINASE PXK
OS493_017807-T1SYNAPTOTAGMIN
OS493_017808-T1
OS493_017809-T1
OS493_017810-T1
OS493_017811-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_017812-T1
OS493_017813-T1
OS493_017814-T1
OS493_017815-T1
OS493_017816-T1
OS493_017817-T1SYNAPTOTAGMIN
OS493_017818-T1WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED
OS493_017819-T1
OS493_017820-T1SYNAPTOTAGMIN
OS493_017821-T1
OS493_017822-T1LD33804P
OS493_017823-T1KELCH PROTEIN
OS493_017824-T1
OS493_017825-T1
OS493_017826-T1SYNAPTOTAGMIN
OS493_017827-T1SYNAPTOTAGMIN
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