Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_017981-T1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
OS493_017982-T1 | |
OS493_017983-T1 | |
OS493_017984-T1 | |
OS493_017985-T1 | ENDONUCLEASE III-LIKE PROTEIN 1 |
OS493_017986-T1 | BIFUNCTIONAL TH2 PROTEIN |
OS493_017987-T1 | UNCHARACTERIZED |
OS493_017988-T1 | CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED |
OS493_017989-T1 | SPRY DOMAIN CONTAINING SOCS BOX PROTEIN |
OS493_017990-T1 | SPRY DOMAIN CONTAINING SOCS BOX PROTEIN |
OS493_017991-T1 | |
OS493_017992-T1 | ACTIN |
OS493_017993-T1 | ACTIN |
OS493_017994-T1 | |
OS493_017995-T1 | EXPRESSED PROTEIN |
OS493_017996-T1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 |
OS493_017997-T1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 |
OS493_017998-T1 | |
OS493_017999-T1 | COILED-COIL DOMAIN-CONTAINING 166 |
OS493_018000-T1 | PROTEASE FAMILY C26 GAMMA-GLUTAMYL HYDROLASE |
OS493_018001-T1 | UNCHARACTERIZED |
OS493_018002-T1 | UNCHARACTERIZED |
OS493_018003-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 |
OS493_018004-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 |
OS493_018006-T1 | DIMETHYLANILINE MONOOXYGENASE |
OS493_018007-T1 | |
OS493_018008-T1 | CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX19 |
OS493_018009-T1 | WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED |
OS493_018010-T1 | |
OS493_018011-T1 | AMINO ACID TRANSPORTER |
OS493_018012-T1 | |
OS493_018013-T1 | |
OS493_018014-T1 | KRUEPPEL-LIKE TRANSCRIPTION FACTOR |
OS493_018015-T1 | |
OS493_018016-T1 | DYSFERLIN-RELATED |
OS493_018017-T1 | DYSFERLIN-RELATED |
OS493_018018-T1 | |
OS493_018020-T1 | METHYLTRANSFERASE |
OS493_018021-T1 | |
OS493_018022-T1 | |
OS493_018023-T1 | METHYLTRANSFERASE |
OS493_018024-T1 | 7,8-DIHYDRO-8-OXOGUANINE TRIPHOSPHATASE |
OS493_018026-T1 | TNF RECEPTOR ASSOCIATED FACTOR |
OS493_018027-T1 | DYSFERLIN-RELATED |
OS493_018029-T1 | TUBERIN |
OS493_018030-T1 | AMINO ACID TRANSPORTER |
OS493_018031-T1 | 60S RIBOSOMAL PROTEIN L18 |
OS493_018032-T1 | |
OS493_018033-T1 | EXCISION REPAIR CROSS-COMPLEMENTING 1 ERCC1 |
OS493_018034-T1 | APYRASE |