Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_018245-T1 | SEGMENT POLARITY PROTEIN DISHEVELLED |
OS493_018246-T1 | OUT AT FIRST |
OS493_018247-T1 | AMP DEAMINASE |
OS493_018248-T1 | AMP DEAMINASE |
OS493_018249-T1 | AMP DEAMINASE |
OS493_018252-T1 | |
OS493_018253-T1 | |
OS493_018254-T1 | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS |
OS493_018257-T1 | GLYCOSYLPHOSPHATIDYLINOSITOL PHOSPHOLIPASE D |
OS493_018258-T1 | ABC TRANSPORTER G FAMILY MEMBER 28 |
OS493_018259-T1 | |
OS493_018260-T1 | |
OS493_018261-T1 | 26S PROTEASOME REGULATORY SUBUNIT |
OS493_018262-T1 | UNCHARACTERIZED |
OS493_018263-T1 | ALPHA- 1,3 -FUCOSYLTRANSFERASE |
OS493_018264-T1 | GLYCOSYLPHOSPHATIDYLINOSITOL PHOSPHOLIPASE D |
OS493_018265-T1 | |
OS493_018266-T1 | |
OS493_018267-T1 | FI24210P1 |
OS493_018268-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 84 |
OS493_018269-T1 | RAP GTPASE-ACTIVATING PROTEIN |
OS493_018271-T1 | |
OS493_018272-T1 | SAM DOMAIN-CONTAINING PROTEIN-RELATED |
OS493_018273-T1 | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA |
OS493_018274-T1 | PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED |
OS493_018275-T1 | PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED |
OS493_018276-T1 | PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED |
OS493_018277-T1 | NNP-1 PROTEIN NOVEL NUCLEAR PROTEIN 1 NOP52 |
OS493_018278-T1 | PREFOLDIN SUBUNIT 2 |
OS493_018279-T1 | PROLINE AND SERINE-RICH PROTEIN 3 |
OS493_018280-T1 | PROLINE AND SERINE-RICH PROTEIN 3 |
OS493_018281-T1 | CYCLIN-DEPENDENT KINASE INHIBITOR 1 |
OS493_018282-T1 | ALCOHOL DEHYDROGENASE |
OS493_018283-T1 | |
OS493_018284-T1 | |
OS493_018285-T1 | PROTEIN SIDEKICK |
OS493_018286-T1 | CONTACTIN 5 |
OS493_018287-T1 | MICROFIBRIL-ASSOCIATED GLYCOPROTEIN 3 |
OS493_018288-T1 | BASIGIN RELATED |
OS493_018289-T1 | |
OS493_018290-T1 | |
OS493_018291-T1 | TITIN |
OS493_018292-T1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
OS493_018293-T1 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
OS493_018294-T1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
OS493_018295-T1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
OS493_018296-T1 | COATOMER SUBUNIT DELTA |
OS493_018297-T1 | RNA HELICASE |
OS493_018299-T1 | TRIACYLGLYCEROL LIPASE |
OS493_018300-T1 | TRIACYLGLYCEROL LIPASE |