Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_018301-T1 | NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT |
OS493_018302-T1 | PRENYLATED RAB ACCEPTOR 1-RELATED |
OS493_018303-T1 | MITOCHONDRIAL RIBOSOMAL PROTEIN L37 |
OS493_018304-T1 | NASOPHARYNGEAL EPITHELIUM SPECIFIC PROTEIN 1 |
OS493_018305-T1 | AMINO ACID TRANSPORTER |
OS493_018306-T1 | AMINO ACID TRANSPORTER |
OS493_018307-T1 | |
OS493_018308-T1 | |
OS493_018309-T1 | |
OS493_018310-T1 | AMINO ACID TRANSPORTER |
OS493_018311-T1 | E3 UBIQUITIN-PROTEIN LIGASE TTC3 |
OS493_018312-T1 | RING FINGER PROTEIN 214 |
OS493_018313-T1 | E3 UBIQUITIN-PROTEIN LIGASE TTC3 |
OS493_018314-T1 | VANG-LIKE PROTEIN |
OS493_018315-T1 | ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED |
OS493_018316-T1 | |
OS493_018317-T1 | |
OS493_018318-T1 | |
OS493_018319-T1 | |
OS493_018320-T1 | PALMITOYLTRANSFERASE ZDHHC16 |
OS493_018321-T1 | BASIGIN RELATED |
OS493_018322-T1 | G PROTEIN-COUPLED RECEPTOR |
OS493_018323-T1 | PROTEIN SEL-1 HOMOLOG 3 |
OS493_018324-T1 | FI24210P1 |
OS493_018325-T1 | HSC70CB, ISOFORM G-RELATED |
OS493_018326-T1 | |
OS493_018327-T1 | PROTEIN MAELSTROM HOMOLOG |
OS493_018328-T1 | HSC70CB, ISOFORM G-RELATED |
OS493_018329-T1 | |
OS493_018330-T1 | DEATH DOMAIN-CONTAINING PROTEIN |
OS493_018331-T1 | |
OS493_018332-T1 | DEATH DOMAIN-CONTAINING PROTEIN |
OS493_018333-T1 | |
OS493_018334-T1 | |
OS493_018335-T1 | |
OS493_018336-T1 | PROTEIN MAELSTROM HOMOLOG |
OS493_018337-T1 | PROTEIN MAELSTROM HOMOLOG |
OS493_018338-T1 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
OS493_018339-T1 | NUCLEAR FRAGILE X MENTAL RETARDATION PROTEIN INTERACTING PROTEIN 1 |
OS493_018340-T1 | |
OS493_018341-T1 | NUCLEAR FRAGILE X MENTAL RETARDATION PROTEIN INTERACTING PROTEIN 1 |
OS493_018342-T1 | 20 KD NUCLEAR CAP BINDING PROTEIN |
OS493_018343-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_018344-T1 | HISTONE DEACETYLASE COMPLEX SUBUNIT SAP130 |
OS493_018345-T1 | SELENOPROTEIN T |
OS493_018346-T1 | |
OS493_018347-T1 | |
OS493_018348-T1 | |
OS493_018349-T1 | |
OS493_018350-T1 |