Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_018817-T1 | TYROSINASE FAMILY MEMBER |
OS493_018818-T1 | |
OS493_018819-T1 | |
OS493_018820-T1 | |
OS493_018821-T1 | ENOLASE (DUF1399) |
OS493_018822-T1 | |
OS493_018823-T1 | |
OS493_018824-T1 | ENOLASE (DUF1399) |
OS493_018825-T1 | ENOLASE (DUF1399) |
OS493_018826-T1 | |
OS493_018827-T1 | |
OS493_018828-T1 | ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN |
OS493_018829-T1 | GLUTAMATE DEHYDROGENASE |
OS493_018830-T1 | GLUTAMATE DEHYDROGENASE |
OS493_018832-T1 | |
OS493_018833-T1 | |
OS493_018834-T1 | |
OS493_018835-T1 | |
OS493_018836-T1 | RHO GTPASE-ACTIVATING PROTEIN 68F |
OS493_018837-T1 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED |
OS493_018838-T1 | TRANSPORTIN 3 AND IMPORTIN 13 |
OS493_018839-T1 | TELOMERE REPEATS-BINDING BOUQUET FORMATION PROTEIN 1 |
OS493_018840-T1 | TELOMERE REPEATS-BINDING BOUQUET FORMATION PROTEIN 1 |
OS493_018841-T1 | CENTROSOMAL PROTEIN OF 290 KDA |
OS493_018842-T1 | |
OS493_018843-T1 | TWO PORE CALCIUM CHANNEL PROTEIN 2 |
OS493_018844-T1 | TWO PORE CALCIUM CHANNEL PROTEIN 2 |
OS493_018845-T1 | TWO PORE CALCIUM CHANNEL PROTEIN 2 |
OS493_018846-T1 | CYCLIC AMP RESPONSE ELEMENT-BINDING PROTEIN A |
OS493_018847-T1 | CYCLINS |
OS493_018848-T1 | |
OS493_018849-T1 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED |
OS493_018850-T1 | RHO GTPASE-ACTIVATING PROTEIN 68F |
OS493_018851-T1 | ZINC FINGER PROTEIN 593 |
OS493_018852-T1 | |
OS493_018853-T1 | |
OS493_018855-T1 | |
OS493_018856-T1 | |
OS493_018857-T1 | TUBULIN--TYROSINE LIGASE-LIKE PROTEIN 12 |
OS493_018858-T1 | TUBULIN--TYROSINE LIGASE-LIKE PROTEIN 12 |
OS493_018859-T1 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
OS493_018860-T1 | ALDEHYDE DEHYDROGENASE-RELATED |
OS493_018861-T1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
OS493_018862-T1 | |
OS493_018863-T1 | BTB/POZ DOMAIN-CONTAINING PROTEIN 10-RELATED |
OS493_018864-T1 | DNAJ HOMOLOG SUBFAMILY B MEMBER 2 |
OS493_018865-T1 | |
OS493_018866-T1 | OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN |
OS493_018867-T1 | PERIODIC TRYPTOPHAN PROTEIN 1 |
OS493_018868-T1 | SHIPPO-1-RELATED |