Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_018869-T1 | |
OS493_018870-T1 | IONOTROPIC GLUTAMATE RECEPTOR |
OS493_018872-T1 | ADHESION G-PROTEIN COUPLED RECEPTOR |
OS493_018873-T1 | C-TYPE LECTIN SUPERFAMILY MEMBER |
OS493_018874-T1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_018875-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_018876-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_018877-T1 | CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE |
OS493_018878-T1 | CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE |
OS493_018879-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_018880-T1 | G-PROTEIN COUPLED RECEPTOR |
OS493_018881-T1 | |
OS493_018882-T1 | |
OS493_018883-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_018885-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_018886-T1 | |
OS493_018887-T1 | PHOSPHATIDYLCHOLINE TRANSFER PROTEIN |
OS493_018888-T1 | MOLTING PROTEIN MLT-4 |
OS493_018889-T1 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN |
OS493_018890-T1 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 27 |
OS493_018891-T1 | |
OS493_018892-T1 | |
OS493_018893-T1 | |
OS493_018894-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_018895-T1 | |
OS493_018896-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_018898-T1 | POLYCYSTIN FAMILY MEMBER |
OS493_018899-T1 | POLYCYSTIN-1 |
OS493_018900-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_018901-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_018902-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_018903-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_018904-T1 | |
OS493_018905-T1 | CHONDROITIN SYNTHASE |
OS493_018906-T1 | CHONDROITIN SYNTHASE |
OS493_018907-T1 | CHONDROITIN SYNTHASE |
OS493_018909-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
OS493_018910-T1 | WD REPEAT CONTAINING PROTEIN |
OS493_018911-T1 | |
OS493_018912-T1 | |
OS493_018913-T1 | MYOSIN HEAVY CHAIN, NON-MUSCLE |
OS493_018914-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_018915-T1 | ENDOCHITINASE |
OS493_018916-T1 | |
OS493_018917-T1 | CYTOKINE RECEPTOR |
OS493_018918-T1 | CYTOKINE RECEPTOR |
OS493_018919-T1 | CYTOKINE RECEPTOR |
OS493_018920-T1 | SI:CH211-161H7.5-RELATED |
OS493_018921-T1 | PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY F MEMBER 2-RELATED |
OS493_018922-T1 |