Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_018977-T1 | |
OS493_018978-T1 | |
OS493_018979-T1 | OLIGOPEPTIDE TRANSPORTER-RELATED |
OS493_018980-T1 | |
OS493_018981-T1 | |
OS493_018982-T1 | NF-E2 INDUCIBLE PROTEIN |
OS493_018983-T1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
OS493_018984-T1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
OS493_018985-T1 | AGAP008170-PA |
OS493_018986-T1 | PROTEIN PSIB-RELATED-RELATED |
OS493_018987-T1 | THROMBOSPONDIN |
OS493_018988-T1 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN |
OS493_018989-T1 | |
OS493_018990-T1 | C-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 180 |
OS493_018991-T1 | |
OS493_018992-T1 | KILLER CELL LECTIN-LIKE RECEPTOR SUBFAMILY F MEMBER 2 |
OS493_018993-T1 | |
OS493_018994-T1 | C-TYPE LECTIN DOMAIN FAMILY 12 MEMBER A-RELATED |
OS493_018995-T1 | |
OS493_018996-T1 | KILLER CELL LECTIN-LIKE RECEPTOR SUBFAMILY F MEMBER 2 |
OS493_018997-T1 | KILLER CELL LECTIN-LIKE RECEPTOR SUBFAMILY F MEMBER 2 |
OS493_018998-T1 | ADDUCIN |
OS493_018999-T1 | |
OS493_019000-T1 | |
OS493_019001-T1 | |
OS493_019002-T1 | |
OS493_019004-T1 | ALDEHYDE DEHYDROGENASE |
OS493_019005-T1 | ALDEHYDE DEHYDROGENASE |
OS493_019007-T1 | PROTEIN-TYROSINE SULFOTRANSFERASE 2 |
OS493_019008-T1 | |
OS493_019009-T1 | PROTEIN-TYROSINE SULFOTRANSFERASE 2 |
OS493_019010-T1 | CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A |
OS493_019011-T1 | CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A |
OS493_019012-T1 | CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A |
OS493_019013-T1 | CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A |
OS493_019014-T1 | ARRESTIN DOMAIN CONTAINING PROTEIN |
OS493_019015-T1 | ARRESTIN DOMAIN CONTAINING PROTEIN |
OS493_019016-T1 | DNA REPAIR PROTEIN XRCC4 |
OS493_019017-T1 | AMINOPEPTIDASE |
OS493_019018-T1 | AMINOPEPTIDASE |
OS493_019019-T1 | ARRESTIN DOMAIN CONTAINING PROTEIN |
OS493_019020-T1 | ARRESTIN DOMAIN CONTAINING PROTEIN |
OS493_019021-T1 | ARRESTIN DOMAIN CONTAINING PROTEIN |
OS493_019022-T1 | |
OS493_019023-T1 | |
OS493_019024-T1 | FI04035P |
OS493_019025-T1 | ARRESTIN DOMAIN CONTAINING PROTEIN |
OS493_019026-T1 | |
OS493_019027-T1 | |
OS493_019028-T1 |