About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_019190-T1ACYL-COA DESATURASE
OS493_019191-T1
OS493_019192-T1ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
OS493_019193-T1
OS493_019194-T1ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
OS493_019196-T1
OS493_019198-T1RADICAL SAM PROTEINS
OS493_019199-T1RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING
OS493_019200-T1
OS493_019202-T1
OS493_019203-T1OLFACTOMEDIN-RELATED
OS493_019204-T1
OS493_019205-T1
OS493_019206-T1GASTRULATION DEFECTIVE PROTEIN 1-RELATED
OS493_019207-T1SI:CH211-266K2.1
OS493_019208-T1
OS493_019209-T1TYROSINE-PROTEIN KINASE
OS493_019210-T1UBIQUITIN-CONJUGATING ENZYME E2
OS493_019211-T1STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
OS493_019212-T1STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
OS493_019213-T1STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
OS493_019214-T1STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
OS493_019215-T1UBIQUITIN-CONJUGATING ENZYME E2
OS493_019216-T1COP9 SIGNALOSOME COMPLEX SUBUNIT 7/DENDRITIC CELL PROTEIN GA17
OS493_019219-T1
OS493_019220-T1
OS493_019222-T1
OS493_019223-T1
OS493_019224-T1PEROXISOME ASSEMBLY PROTEIN 10
OS493_019225-T1CALCIUM BINDING PROTEIN
OS493_019226-T1CALCIUM BINDING PROTEIN
OS493_019227-T1MYOSIN LIGHT CHAIN 1, 3
OS493_019228-T1CALCIUM BINDING PROTEIN
OS493_019229-T1CALCIUM BINDING PROTEIN
OS493_019230-T1CALCIUM BINDING PROTEIN
OS493_019231-T1MYOSIN LIGHT CHAIN 1, 3
OS493_019232-T1
OS493_019233-T1
OS493_019234-T1INTELECTIN
OS493_019235-T1INTELECTIN
OS493_019237-T1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
OS493_019238-T1
OS493_019239-T1GUSTATORY RECEPTOR
OS493_019240-T1
OS493_019241-T1
OS493_019242-T1GUSTATORY RECEPTOR
OS493_019243-T1
OS493_019244-T1GUSTATORY RECEPTOR
OS493_019245-T1
OS493_019246-T1
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