Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_019667-T1 | SIMILAR TO HYPOTHETICAL PROTEIN FLJ20508 |
OS493_019668-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 180 |
OS493_019669-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 180 |
OS493_019670-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 180 |
OS493_019671-T1 | RAS-RELATED PROTEIN RAB |
OS493_019672-T1 | REGULATOR OF CHROMOSOME CONDENSATION |
OS493_019673-T1 | |
OS493_019674-T1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 5-RELATED |
OS493_019675-T1 | |
OS493_019676-T1 | |
OS493_019677-T1 | MIXED LINEAGE PROTEIN KINASE |
OS493_019678-T1 | MIXED LINEAGE PROTEIN KINASE |
OS493_019679-T1 | |
OS493_019680-T1 | |
OS493_019681-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_019682-T1 | G-PROTEIN COUPLED RECEPTOR |
OS493_019683-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_019684-T1 | G-PROTEIN COUPLED RECEPTOR |
OS493_019685-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_019686-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_019687-T1 | TRANSIENT RECEPTOR POTENTIAL CHANNEL |
OS493_019688-T1 | TRANSIENT RECEPTOR POTENTIAL CHANNEL |
OS493_019689-T1 | TRANSIENT RECEPTOR POTENTIAL CHANNEL |
OS493_019690-T1 | TRANSIENT RECEPTOR POTENTIAL CHANNEL |
OS493_019691-T1 | TRANSIENT RECEPTOR POTENTIAL CHANNEL |
OS493_019692-T1 | TRANSIENT RECEPTOR POTENTIAL CHANNEL |
OS493_019693-T1 | |
OS493_019694-T1 | TRANSIENT RECEPTOR POTENTIAL CHANNEL |
OS493_019695-T1 | TRANSIENT RECEPTOR POTENTIAL CHANNEL |
OS493_019696-T1 | |
OS493_019697-T1 | URICASE |
OS493_019698-T1 | |
OS493_019699-T1 | |
OS493_019700-T1 | |
OS493_019701-T1 | |
OS493_019702-T1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
OS493_019703-T1 | PROTEIN CBG12474 |
OS493_019704-T1 | |
OS493_019705-T1 | LONG-CHAIN FATTY ACID TRANSPORT PROTEIN |
OS493_019706-T1 | LONG-CHAIN FATTY ACID TRANSPORT PROTEIN |
OS493_019707-T1 | |
OS493_019708-T1 | LONG-CHAIN FATTY ACID TRANSPORT PROTEIN |
OS493_019709-T1 | CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR |
OS493_019710-T1 | UNCHARACTERIZED |
OS493_019711-T1 | |
OS493_019712-T1 | |
OS493_019713-T1 | |
OS493_019714-T1 | DEVELOPMENTALLY-REGULATED GTP-BINDING PROTEIN 2 |
OS493_019715-T1 | |
OS493_019716-T1 |