About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_019822-T1NMDA RECEPTOR SYNAPTONUCLEAR SIGNALING AND NEURONAL MIGRATION FACTOR
OS493_019823-T1
OS493_019824-T1CATION-TRANSPORTING ATPASE-RELATED
OS493_019826-T1CATION-TRANSPORTING ATPASE-RELATED
OS493_019827-T1
OS493_019828-T1
OS493_019829-T1
OS493_019830-T1DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER
OS493_019831-T1F-BOX ONLY PROTEIN 38
OS493_019832-T1F-BOX ONLY PROTEIN 38
OS493_019833-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_019834-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_019835-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_019836-T1
OS493_019838-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_019839-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_019840-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_019841-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_019842-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_019843-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_019845-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_019846-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_019847-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_019848-T1
OS493_019849-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_019850-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_019851-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_019852-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_019853-T1
OS493_019854-T1
OS493_019855-T1COLLAGEN
OS493_019856-T1G/T AND G/U MISMATCH-SPECIFIC DNA GLYCOSYLASE
OS493_019857-T1
OS493_019858-T1MYOSIN
OS493_019859-T1UNCHARACTERIZED
OS493_019860-T1UNCHARACTERIZED
OS493_019861-T1UNCHARACTERIZED
OS493_019862-T1
OS493_019863-T1
OS493_019864-T1
OS493_019865-T1
OS493_019866-T1ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN
OS493_019867-T1MAJOR FACILITATOR SUPERFAMILY TRANSPORTER 16, ISOFORM B
OS493_019868-T1F-ACTIN-CAPPING PROTEIN SUBUNIT ALPHA
OS493_019869-T1
OS493_019870-T1TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
OS493_019871-T1
OS493_019872-T1
OS493_019873-T1
OS493_019875-T1
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