Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_019983-T1 | PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED |
OS493_019985-T1 | ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD |
OS493_019986-T1 | SERINE PROTEASE INHIBITOR |
OS493_019987-T1 | SERINE PROTEASE INHIBITOR |
OS493_019988-T1 | UNCHARACTERIZED |
OS493_019989-T1 | |
OS493_019990-T1 | TRANSMEMBRANE PROTEIN 168 |
OS493_019991-T1 | |
OS493_019992-T1 | PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED |
OS493_019994-T1 | - |
OS493_019995-T1 | ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD |
OS493_019996-T1 | SERINE PROTEASE INHIBITOR |
OS493_019997-T1 | UNCHARACTERIZED |
OS493_019998-T1 | TRANSMEMBRANE PROTEIN 168 |
OS493_019999-T1 | UNCHARACTERIZED |
OS493_020000-T1 | |
OS493_020001-T1 | |
OS493_020002-T1 | PERIPHILIN 1 |
OS493_020003-T1 | SAM DOMAIN-CONTAINING PROTEIN-RELATED |
OS493_020004-T1 | SAM DOMAIN-CONTAINING PROTEIN-RELATED |
OS493_020005-T1 | |
OS493_020006-T1 | |
OS493_020007-T1 | EXS-RELATED PROTEIN |
OS493_020008-T1 | |
OS493_020009-T1 | CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18 |
OS493_020010-T1 | RAB FAMILY |
OS493_020011-T1 | SENTRIN-SPECIFIC PROTEASE 8 |
OS493_020012-T1 | ATAXIN 7 RELATED |
OS493_020013-T1 | ATAXIN 7 RELATED |
OS493_020014-T1 | |
OS493_020015-T1 | |
OS493_020016-T1 | |
OS493_020017-T1 | |
OS493_020018-T1 | |
OS493_020019-T1 | RNA-DEPENDENT RNA POLYMERASE |
OS493_020020-T1 | HELICASE WITH DEATH DOMAIN-RELATED |
OS493_020021-T1 | COPINE |
OS493_020022-T1 | |
OS493_020023-T1 | COPINE |
OS493_020024-T1 | COPINE |
OS493_020026-T1 | TUBULIN MONOGLYCYLASE TTLL3 |
OS493_020027-T1 | |
OS493_020028-T1 | SYNAPTOPHYSIN |
OS493_020029-T1 | GNAT FAMILY N-ACETYLTRANSFERASE |
OS493_020030-T1 | 60S RIBOSOMAL PROTEIN L18A |
OS493_020032-T1 | ACYL-COA DEHYDROGENASE |
OS493_020033-T1 | ACYL-COA DEHYDROGENASE |
OS493_020034-T1 | |
OS493_020035-T1 | |
OS493_020036-T1 |