About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_019983-T1PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED
OS493_019985-T1ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD
OS493_019986-T1SERINE PROTEASE INHIBITOR
OS493_019987-T1SERINE PROTEASE INHIBITOR
OS493_019988-T1UNCHARACTERIZED
OS493_019989-T1
OS493_019990-T1TRANSMEMBRANE PROTEIN 168
OS493_019991-T1
OS493_019992-T1PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED
OS493_019994-T1-
OS493_019995-T1ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD
OS493_019996-T1SERINE PROTEASE INHIBITOR
OS493_019997-T1UNCHARACTERIZED
OS493_019998-T1TRANSMEMBRANE PROTEIN 168
OS493_019999-T1UNCHARACTERIZED
OS493_020000-T1
OS493_020001-T1
OS493_020002-T1PERIPHILIN 1
OS493_020003-T1SAM DOMAIN-CONTAINING PROTEIN-RELATED
OS493_020004-T1SAM DOMAIN-CONTAINING PROTEIN-RELATED
OS493_020005-T1
OS493_020006-T1
OS493_020007-T1EXS-RELATED PROTEIN
OS493_020008-T1
OS493_020009-T1CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18
OS493_020010-T1RAB FAMILY
OS493_020011-T1SENTRIN-SPECIFIC PROTEASE 8
OS493_020012-T1ATAXIN 7 RELATED
OS493_020013-T1ATAXIN 7 RELATED
OS493_020014-T1
OS493_020015-T1
OS493_020016-T1
OS493_020017-T1
OS493_020018-T1
OS493_020019-T1RNA-DEPENDENT RNA POLYMERASE
OS493_020020-T1HELICASE WITH DEATH DOMAIN-RELATED
OS493_020021-T1COPINE
OS493_020022-T1
OS493_020023-T1COPINE
OS493_020024-T1COPINE
OS493_020026-T1TUBULIN MONOGLYCYLASE TTLL3
OS493_020027-T1
OS493_020028-T1SYNAPTOPHYSIN
OS493_020029-T1GNAT FAMILY N-ACETYLTRANSFERASE
OS493_020030-T160S RIBOSOMAL PROTEIN L18A
OS493_020032-T1ACYL-COA DEHYDROGENASE
OS493_020033-T1ACYL-COA DEHYDROGENASE
OS493_020034-T1
OS493_020035-T1
OS493_020036-T1
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