About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_008059-T1TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
OS493_008060-T1-
OS493_008061-T1EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED
OS493_008062-T1EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED
OS493_008063-T1ADHESION G-PROTEIN COUPLED RECEPTOR
OS493_008064-T1DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED
OS493_008065-T1TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
OS493_008066-T1LEUCOKININ RECEPTOR-RELATED
OS493_008067-T1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_008068-T1O-ACYLTRANSFERASE (WSD1-LIKE) FAMILY PROTEIN
OS493_008069-T1ADHESION G-PROTEIN COUPLED RECEPTOR
OS493_008070-T1-
OS493_008071-T1COLLAGEN ALPHA
OS493_008072-T1ADHESION G-PROTEIN COUPLED RECEPTOR
OS493_008073-T1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_008074-T1LEUCOKININ RECEPTOR-RELATED
OS493_008075-T1PHOSPHOLIPASE A2 FAMILY MEMBER
OS493_008076-T1PHOSPHOLIPASE A2 FAMILY MEMBER
OS493_008077-T1PHOSPHOLIPASE A2 FAMILY MEMBER
OS493_008078-T1PHOSPHOLIPASE A2 FAMILY MEMBER
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