Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_020699-T1 | |
OS493_020700-T1 | RPE-SPONDIN |
OS493_020702-T1 | CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2 |
OS493_020703-T1 | CRUMBS FAMILY MEMBER |
OS493_020704-T1 | LATROPHILIN RECEPTOR-LIKE PROTEIN A |
OS493_020705-T1 | |
OS493_020706-T1 | |
OS493_020707-T1 | |
OS493_020708-T1 | |
OS493_020709-T1 | |
OS493_020710-T1 | SAM DOMAIN-CONTAINING PROTEIN-RELATED |
OS493_020711-T1 | |
OS493_020712-T1 | PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED |
OS493_020713-T1 | PHOSPHOMEVALONATE KINASE |
OS493_020714-T1 | DIPEPTIDYL PEPTIDASE III-RELATED |
OS493_020715-T1 | DIPEPTIDYL PEPTIDASE III-RELATED |
OS493_020716-T1 | |
OS493_020717-T1 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S10 |
OS493_020718-T1 | ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE |
OS493_020719-T1 | TESTICULAR SOLUBLE ADENYLYL CYCLASE |
OS493_020720-T1 | TESTICULAR SOLUBLE ADENYLYL CYCLASE |
OS493_020721-T1 | TESTICULAR SOLUBLE ADENYLYL CYCLASE |
OS493_020722-T1 | TESTICULAR SOLUBLE ADENYLYL CYCLASE |
OS493_020723-T1 | |
OS493_020724-T1 | |
OS493_020725-T1 | |
OS493_020726-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_020727-T1 | |
OS493_020728-T1 | MONOCARBOXYLATE TRANSPORTER |
OS493_020729-T1 | |
OS493_020730-T1 | |
OS493_020731-T1 | ANKYRIN REPEAT PROTEIN |
OS493_020732-T1 | ACETYL-COA HYDROLASE-RELATED |
OS493_020733-T1 | EXPRESSED PROTEIN |
OS493_020734-T1 | ACETYL-COA HYDROLASE-RELATED |
OS493_020735-T1 | |
OS493_020736-T1 | SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS |
OS493_020737-T1 | SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS |
OS493_020738-T1 | SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS |
OS493_020739-T1 | SYNAPTOTAGMIN 14, ISOFORM D |
OS493_020740-T1 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
OS493_020741-T1 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
OS493_020742-T1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
OS493_020743-T1 | |
OS493_020744-T1 | |
OS493_020745-T1 | |
OS493_020746-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_020747-T1 | |
OS493_020748-T1 | CARBONIC ANHYDRASE |
OS493_020749-T1 | OPSIN |