About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_020646-T1N-ACETYLGALACTOSAMINYLTRANSFERASE
OS493_020647-T1ATP SYNTHASE
OS493_020648-T1EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
OS493_020649-T1EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
OS493_020650-T1
OS493_020651-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_020652-T1
OS493_020653-T1
OS493_020654-T1IONOTROPIC GLUTAMATE RECEPTOR
OS493_020655-T1
OS493_020656-T1UNCHARACTERIZED PROTEIN C17ORF53 HOMOLOG
OS493_020657-T1
OS493_020658-T1ANNEXIN
OS493_020659-T1
OS493_020661-T1
OS493_020662-T1PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
OS493_020663-T1PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
OS493_020664-T1PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
OS493_020665-T1PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
OS493_020666-T1
OS493_020667-T1UNCHARACTERIZED
OS493_020668-T1PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
OS493_020669-T1L1 TRANSPOSABLE ELEMENT-RELATED
OS493_020670-T1
OS493_020671-T1
OS493_020673-T1UV-STIMULATED SCAFFOLD PROTEIN A
OS493_020674-T1UV-STIMULATED SCAFFOLD PROTEIN A
OS493_020675-T1
OS493_020676-T1
OS493_020677-T1COLLAGEN ALPHA
OS493_020678-T1UV-STIMULATED SCAFFOLD PROTEIN A
OS493_020679-T1MYELIN TRANSCRIPTION FACTOR 1-RELATED
OS493_020680-T1KIAA0586 PROTEIN
OS493_020681-T1
OS493_020682-T1MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED
OS493_020683-T1
OS493_020684-T1ANNEXIN
OS493_020685-T1PHOSPHOLIPASE A2 FAMILY MEMBER
OS493_020686-T1DOPAMINE BETA HYDROXYLASE RELATED
OS493_020687-T1
OS493_020689-T1FAST LEU-RICH DOMAIN-CONTAINING
OS493_020690-T1
OS493_020691-T1
OS493_020692-T1XK-RELATED PROTEIN
OS493_020693-T1XK-RELATED PROTEIN
OS493_020694-T1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
OS493_020695-T1
OS493_020696-T1XK-RELATED PROTEIN
OS493_020697-T1XK-RELATED PROTEIN
OS493_020698-T1MALATE DEHYDROGENASE
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