About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_020911-T1MYC PROTO-ONCOGENE
OS493_020912-T1
OS493_020913-T1MYC PROTO-ONCOGENE
OS493_020914-T1MYC PROTO-ONCOGENE
OS493_020915-T1MYC PROTO-ONCOGENE
OS493_020916-T1
OS493_020917-T1
OS493_020918-T1
OS493_020919-T1
OS493_020920-T1
OS493_020921-T1
OS493_020922-T1
OS493_020923-T1
OS493_020924-T1
OS493_020925-T1
OS493_020926-T1
OS493_020927-T1
OS493_020928-T1
OS493_020929-T1
OS493_020930-T1UNCHARACTERIZED
OS493_020931-T1
OS493_020932-T1S-ADENOSYL-METHYLTRANSFERASE MRAW
OS493_020933-T1UBIQUITIN-CONJUGATING ENZYME E2
OS493_020934-T1ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN
OS493_020935-T1BONUS, ISOFORM C-RELATED
OS493_020936-T1BONUS, ISOFORM C-RELATED
OS493_020937-T1ZINC FINGER AND BTB DOMAIN-CONTAINING
OS493_020938-T1ZINC FINGER PROTEIN
OS493_020939-T1HCG1796489
OS493_020940-T1HCG1796489
OS493_020941-T1BONUS, ISOFORM C-RELATED
OS493_020942-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_020943-T1
OS493_020944-T1
OS493_020945-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_020946-T1PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED
OS493_020947-T1
OS493_020948-T1
OS493_020949-T1
OS493_020950-T1MYOTROPHIN
OS493_020951-T1PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 27
OS493_020952-T1CHONDROITIN SYNTHASE
OS493_020953-T1CHONDROITIN SYNTHASE
OS493_020954-T1CHONDROITIN SYNTHASE
OS493_020955-T1PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 27
OS493_020956-T1ANTHRAX TOXIN RECEPTOR
OS493_020957-T1GLUTAMATE 5-KINASE
OS493_020958-T1MYOSIN REGULATORY LIGHT CHAIN 2
OS493_020959-T1FUKUTIN RELATED PROTEIN
OS493_020960-T1VOLTAGE-DEPENDENT CALCIUM CHANNEL BETA SUBUNIT
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