Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_021062-T1 | |
OS493_021063-T1 | |
OS493_021064-T1 | |
OS493_021065-T1 | |
OS493_021066-T1 | |
OS493_021067-T1 | UNCHARACTERIZED |
OS493_021068-T1 | UPF0705 PROTEIN C11ORF49 |
OS493_021069-T1 | |
OS493_021070-T1 | |
OS493_021071-T1 | |
OS493_021072-T1 | REPETIN |
OS493_021073-T1 | |
OS493_021074-T1 | |
OS493_021075-T1 | |
OS493_021076-T1 | FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD |
OS493_021077-T1 | |
OS493_021078-T1 | - |
OS493_021079-T1 | FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD |
OS493_021080-T1 | PROTEIN TORNADO 1 |
OS493_021081-T1 | |
OS493_021082-T1 | |
OS493_021083-T1 | MALE STERILITY PROTEIN 2-RELATED |
OS493_021084-T1 | MPS ONE BINDER KINASE ACTIVATOR-LIKE MOB |
OS493_021085-T1 | TRANSCRIPTION INITIATION FACTOR IIH-RELATED |
OS493_021086-T1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
OS493_021087-T1 | |
OS493_021088-T1 | |
OS493_021089-T1 | |
OS493_021090-T1 | |
OS493_021091-T1 | TRANSCRIPTION INITIATION FACTOR IIH-RELATED |
OS493_021092-T1 | TRANSCRIPTION INITIATION FACTOR IIH-RELATED |
OS493_021093-T1 | |
OS493_021094-T1 | ANKYRIN REPEAT FAMILY PROTEIN |
OS493_021095-T1 | |
OS493_021096-T1 | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED |
OS493_021098-T1 | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED |
OS493_021099-T1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
OS493_021100-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
OS493_021101-T1 | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED |
OS493_021102-T1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
OS493_021103-T1 | |
OS493_021104-T1 | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED |
OS493_021105-T1 | |
OS493_021106-T1 | |
OS493_021107-T1 | POTE ANKYRIN DOMAIN |
OS493_021108-T1 | |
OS493_021109-T1 | CARBOHYDRATE SULFOTRANSFERASE |
OS493_021110-T1 | CARBOHYDRATE SULFOTRANSFERASE |
OS493_021111-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_021112-T1 | LEUCOKININ RECEPTOR-RELATED |