About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_021215-T1CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 161
OS493_021216-T1ACYL-COENZYME A THIOESTERASE THEM4
OS493_021217-T1
OS493_021219-T1FORKHEAD BOX PROTEIN
OS493_021220-T1BCL-2 RELATED
OS493_021221-T1AGAP001464-PB
OS493_021222-T1
OS493_021223-T1SIMILAR TO CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 (CHD-1)
OS493_021224-T1CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED
OS493_021225-T1CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED
OS493_021226-T1CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED
OS493_021227-T1CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED
OS493_021228-T1
OS493_021229-T1FORKHEAD BOX PROTEIN
OS493_021230-T1SYNAPTOTAGMIN
OS493_021231-T1
OS493_021232-T1
OS493_021233-T1
OS493_021234-T1SYNAPTOTAGMIN
OS493_021235-T1SYNAPTOTAGMIN
OS493_021236-T1HEDGEHOG
OS493_021237-T1
OS493_021238-T1
OS493_021239-T1
OS493_021240-T1AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT
OS493_021241-T1
OS493_021242-T140S RIBOSOMAL PROTEIN S17
OS493_021243-T1WD REPEAT-CONTAINING PROTEIN POP1
OS493_021244-T1LAMININ G-LIKE DOMAIN-CONTAINING PROTEIN
OS493_021245-T1
OS493_021246-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
OS493_021247-T1PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT
OS493_021248-T1
OS493_021249-T1PROGRAMMED CELL DEATH PROTEIN 7
OS493_021250-T1
OS493_021251-T1DIADENOSINE 5,5-P1,P4-TETRAPHOSPHATE PYROPHOSPHOHYDROLASE MUTT
OS493_021252-T1DIADENOSINE 5,5-P1,P4-TETRAPHOSPHATE PYROPHOSPHOHYDROLASE MUTT
OS493_021253-T1DIADENOSINE 5,5-P1,P4-TETRAPHOSPHATE PYROPHOSPHOHYDROLASE MUTT
OS493_021254-T1
OS493_021255-T1PROGRAMMED CELL DEATH PROTEIN 7
OS493_021256-T1
OS493_021257-T1-
OS493_021258-T1APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
OS493_021259-T1
OS493_021267-T1
OS493_021268-T1COLLAGEN ALPHA
OS493_021269-T1UNCHARACTERIZED
OS493_021270-T1COLLAGEN ALPHA
OS493_021271-T1COLLAGEN ALPHA
OS493_021272-T1CUB DOMAIN-CONTAINING PROTEIN
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