About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_008562-T1FORKHEAD BOX PROTEIN
OS493_008563-T1N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER
OS493_008564-T1SOLUTE CARRIER FAMILY 35
OS493_008565-T1FORKHEAD BOX PROTEIN
OS493_008566-T1-
OS493_008567-T1BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED
OS493_008568-T1SPINDLE ASSEMBLY ABNORMAL PROTEIN 6 HOMOLOG
OS493_008569-T1SPINDLE ASSEMBLY ABNORMAL PROTEIN 6 HOMOLOG
OS493_008570-T1-
OS493_008571-T1AMINE OXIDASE
OS493_008572-T1SODIUM/CHLORIDE DEPENDENT TRANSPORTER
OS493_008573-T1SODIUM/CHLORIDE DEPENDENT TRANSPORTER
OS493_008574-T1CT120 PROTEIN
OS493_008575-T1GLYCOSYL TRANSFERASE-RELATED
OS493_008577-T1KELCH PROTEIN
OS493_008578-T1VOLTAGE-GATED POTASSIUM CHANNEL
OS493_008579-T1VOLTAGE-GATED POTASSIUM CHANNEL
OS493_008580-T1LD33695P
OS493_008581-T1HIGH MOBILITY GROUP PROTEIN DSP1
OS493_008582-T1ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE
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