About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_021380-T1DNAJ HOMOLOG SUBFAMILY C MEMBER 22
OS493_021381-T1PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47
OS493_021382-T1DYNEIN HEAVY CHAIN
OS493_021383-T1DYNEIN HEAVY CHAIN FAMILY PROTEIN
OS493_021384-T1DYNEIN HEAVY CHAIN FAMILY PROTEIN
OS493_021385-T1
OS493_021386-T1TARTRATE-RESISTANT ACID PHOSPHATASE TYPE 5
OS493_021388-T1PROTEIN SIDEKICK
OS493_021389-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_021390-T1OVOCHYMASE-RELATED
OS493_021391-T1DUF3504 DOMAIN-CONTAINING PROTEIN
OS493_021392-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_021393-T1
OS493_021394-T1ZINC FINGER PROTEIN
OS493_021395-T1ALDEHYDE DEHYDROGENASE-RELATED
OS493_021396-T1
OS493_021397-T1CYCLINS
OS493_021398-T1CYCLINS
OS493_021399-T1CYCLINS
OS493_021400-T1
OS493_021401-T1
OS493_021402-T1
OS493_021403-T1PDZ DOMAIN-CONTAINING PROTEIN 8
OS493_021404-T1PDZ DOMAIN-CONTAINING PROTEIN 8
OS493_021405-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_021406-T1
OS493_021407-T1
OS493_021408-T1
OS493_021409-T1
OS493_021410-T1
OS493_021411-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_021412-T1PDZ DOMAIN-CONTAINING PROTEIN 8
OS493_021413-T1PDZ DOMAIN-CONTAINING PROTEIN 8
OS493_021414-T1
OS493_021415-T1
OS493_021416-T1PDZ DOMAIN-CONTAINING PROTEIN 8
OS493_021418-T1PDZ DOMAIN-CONTAINING PROTEIN 8
OS493_021419-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_021420-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_021421-T1
OS493_021422-T1
OS493_021423-T1
OS493_021424-T1
OS493_021425-T1
OS493_021426-T1
OS493_021427-T1
OS493_021428-T1
OS493_021429-T1
OS493_021430-T1
OS493_021431-T1CXC DOMAIN-CONTAINING PROTEIN-RELATED
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