Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_021483-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_021484-T1 | VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL |
OS493_021485-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
OS493_021486-T1 | |
OS493_021488-T1 | RIB43A-RELATED |
OS493_021489-T1 | PROTEIN PHOSPHATASE 2C |
OS493_021490-T1 | PROTEIN PHOSPHATASE 2C |
OS493_021491-T1 | ADP-RIBOSYLGLYCOHYDROLASE |
OS493_021492-T1 | PHEROMONE SHUTDOWN PROTEIN |
OS493_021493-T1 | P-LOOP CONTAINING NUCLEOTIDE TRIPHOSPHATE HYDROLASE |
OS493_021494-T1 | |
OS493_021497-T1 | |
OS493_021499-T1 | |
OS493_021502-T1 | SUSHI DOMAIN-CONTAINING PROTEIN 1 |
OS493_021504-T1 | CONTACTIN 5 |
OS493_021506-T1 | |
OS493_021507-T1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
OS493_021508-T1 | PROTEIN SIDEKICK |
OS493_021509-T1 | CYTOKINE RECEPTOR |
OS493_021510-T1 | GLYCOGEN DEBRANCHING ENZYME |
OS493_021512-T1 | GLYCOGEN DEBRANCHING ENZYME |
OS493_021513-T1 | GLYCOGEN DEBRANCHING ENZYME |
OS493_021514-T1 | HISTONE H1 |
OS493_021515-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_021516-T1 | |
OS493_021517-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_021518-T1 | HISTONE H1 |
OS493_021519-T1 | NADH:UBIQUINONE OXIDOREDUCTASE B18-LIKE SUBUNIT |
OS493_021520-T1 | ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN |
OS493_021521-T1 | |
OS493_021522-T1 | ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN |
OS493_021523-T1 | |
OS493_021524-T1 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 7 |
OS493_021525-T1 | KRUEPPEL-LIKE TRANSCRIPTION FACTOR |
OS493_021526-T1 | |
OS493_021527-T1 | PROTEASE M14 CARBOXYPEPTIDASE |
OS493_021528-T1 | PROTEASE M14 CARBOXYPEPTIDASE |
OS493_021529-T1 | G_PROTEIN_RECEP_F2_4 DOMAIN-CONTAINING PROTEIN |
OS493_021530-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_021531-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_021532-T1 | |
OS493_021533-T1 | |
OS493_021534-T1 | RIBONUCLEASE |
OS493_021535-T1 | DNA2/NAM7 HELICASE FAMILY |
OS493_021537-T1 | RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY |
OS493_021538-T1 | |
OS493_021539-T1 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
OS493_021540-T1 | |
OS493_021541-T1 | |
OS493_021542-T1 | U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4 |