Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_021543-T1 | IGGFC_BINDING DOMAIN-CONTAINING PROTEIN |
OS493_021544-T1 | IGGFC_BINDING DOMAIN-CONTAINING PROTEIN |
OS493_021545-T1 | |
OS493_021546-T1 | |
OS493_021547-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_021548-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_021551-T1 | SULFITE REDUCTASE |
OS493_021552-T1 | SULFITE REDUCTASE |
OS493_021553-T1 | - |
OS493_021554-T1 | |
OS493_021555-T1 | PLEXUS, ISOFORM A |
OS493_021556-T1 | OXIDOREDUCTASE-RELATED |
OS493_021557-T1 | OXIDOREDUCTASE-RELATED |
OS493_021558-T1 | |
OS493_021559-T1 | |
OS493_021560-T1 | OXIDOREDUCTASE-RELATED |
OS493_021561-T1 | DIPHTHINE SYNTHASE |
OS493_021562-T1 | 30S 40S RIBOSOMAL PROTEIN |
OS493_021563-T1 | CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE |
OS493_021564-T1 | NUCLEAR AUTOANTIGENIC SPERM PROTEIN NASP -RELATED |
OS493_021565-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 78 |
OS493_021566-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 78 |
OS493_021567-T1 | KINESIN-RELATED |
OS493_021568-T1 | |
OS493_021569-T1 | RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED |
OS493_021570-T1 | RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED |
OS493_021571-T1 | TRANS-SULFURATION ENZYME FAMILY MEMBER |
OS493_021572-T1 | PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT Q-RELATED |
OS493_021573-T1 | SODIUM/DICARBOXYLATE SYMPORTER-RELATED |
OS493_021574-T1 | U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A |
OS493_021575-T1 | POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 |
OS493_021576-T1 | CALCIUM BINDING PROTEIN |
OS493_021578-T1 | |
OS493_021579-T1 | SUSHI DOMAIN-CONTAINING PROTEIN 1 |
OS493_021581-T1 | PROTEIN SIDEKICK |
OS493_021584-T1 | |
OS493_021585-T1 | SUSHI DOMAIN-CONTAINING PROTEIN 1 |
OS493_021588-T1 | |
OS493_021589-T1 | |
OS493_021590-T1 | SUSHI DOMAIN-CONTAINING PROTEIN 1 |
OS493_021592-T1 | |
OS493_021594-T1 | OXIDOREDUCTASE-RELATED |
OS493_021595-T1 | |
OS493_021596-T1 | LD33804P |
OS493_021597-T1 | |
OS493_021598-T1 | |
OS493_021599-T1 | LD33804P |
OS493_021600-T1 | KELCH PROTEIN |
OS493_021601-T1 | LD33804P |
OS493_021602-T1 | INTRAFLAGELLAR TRANSPORT PROTEIN 74 HOMOLOG |