About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_021660-T1DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED
OS493_021661-T1WD REPEAT PROTEIN 26-RELATED
OS493_021662-T1
OS493_021663-T1MONOCARBOXYLATE TRANSPORTER
OS493_021664-T1MONOCARBOXYLATE TRANSPORTER
OS493_021665-T1MONOCARBOXYLATE TRANSPORTER
OS493_021666-T1MONOCARBOXYLATE TRANSPORTER
OS493_021667-T1RIBOFLAVIN TRANSPORTER RIBJ
OS493_021668-T1MONOCARBOXYLATE TRANSPORTER
OS493_021669-T1MONOCARBOXYLATE TRANSPORTER
OS493_021670-T1MONOCARBOXYLATE TRANSPORTER
OS493_021671-T1MONOCARBOXYLATE TRANSPORTER
OS493_021672-T1MONOCARBOXYLATE TRANSPORTER
OS493_021673-T1MONOCARBOXYLATE TRANSPORTER
OS493_021674-T1MONOCARBOXYLATE TRANSPORTER
OS493_021675-T1
OS493_021676-T1
OS493_021677-T1CD59 GLYCOPROTEIN
OS493_021678-T1CD59 GLYCOPROTEIN
OS493_021679-T1HLA CLASS II GAMMA CHAIN
OS493_021680-T1
OS493_021681-T1ERO1-RELATED
OS493_021682-T1
OS493_021683-T1
OS493_021684-T1
OS493_021685-T1GLUTATHIONE HYDROLASE
OS493_021686-T1MAMMALIAN EPENDYMIN-RELATED PROTEIN 1
OS493_021687-T1HELICASE RELATED
OS493_021688-T130S RIBOSOMAL PROTEIN S1
OS493_021689-T1SERINE INCORPORATOR
OS493_021691-T1ERO1-RELATED
OS493_021692-T1TETRASPANIN
OS493_021693-T1CLE
OS493_021694-T1MITOCHONDRIAL GENOME MAINTENANCE EXONUCLEASE 1
OS493_021695-T1UPF0764 PROTEIN C16ORF89
OS493_021696-T1POLYCYSTIN FAMILY MEMBER
OS493_021697-T1POLYCYSTIN-1
OS493_021698-T1POLYCYSTIN FAMILY MEMBER
OS493_021699-T1UPF0764 PROTEIN C16ORF89
OS493_021700-T1UPF0764 PROTEIN C16ORF89
OS493_021701-T1NF-KAPPA-B INHIBITOR ALPHA
OS493_021702-T1TRYPTOPHANYL-TRNA SYNTHETASE
OS493_021703-T1LEUCINE-RICH REPEAT-CONTAINING PROTEIN 34
OS493_021704-T1N-ACETYLGALACTOSAMINYLTRANSFERASE
OS493_021705-T1RIBOSOMAL PROTEIN S6 KINASE
OS493_021706-T1ALPHA-AMYLASE FAMILY MEMBER
OS493_021707-T1TRANSCRIPTION INITIATION FACTOR IIB-RELATED
OS493_021708-T1TRANSCRIPTION INITIATION FACTOR IIB-RELATED
OS493_021709-T1PA14 DOMAIN-CONTAINING PROTEIN
OS493_021710-T1POLYCYSTIN FAMILY MEMBER
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