Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_022219-T1 | PROTEIN SHORTAGE IN CHIASMATA 1 ORTHOLOG |
OS493_022220-T1 | |
OS493_022221-T1 | ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT |
OS493_022222-T1 | CYTOCHROME P450 FAMILY 4 |
OS493_022223-T1 | CYTOCHROME P450 FAMILY 4 |
OS493_022224-T1 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
OS493_022225-T1 | |
OS493_022226-T1 | CENTROMERE PROTEIN C |
OS493_022227-T1 | |
OS493_022228-T1 | |
OS493_022229-T1 | INTRAFLAGELLAR TRANSPORT PROTEIN 25 HOMOLOG |
OS493_022230-T1 | BTB/POZ DOMAIN-CONTAINING PROTEIN 19 |
OS493_022231-T1 | RHO GTPASE-ACTIVATING PROTEIN 100F |
OS493_022232-T1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_022233-T1 | TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE |
OS493_022234-T1 | TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE |
OS493_022235-T1 | USP DOMAIN-CONTAINING PROTEIN |
OS493_022236-T1 | ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN |
OS493_022237-T1 | |
OS493_022238-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
OS493_022239-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
OS493_022240-T1 | |
OS493_022241-T1 | |
OS493_022242-T1 | |
OS493_022243-T1 | |
OS493_022244-T1 | |
OS493_022245-T1 | GLYCOPROTEIN HORMONE RECEPTOR |
OS493_022246-T1 | KRUEPPEL-LIKE TRANSCRIPTION FACTOR |
OS493_022247-T1 | |
OS493_022248-T1 | |
OS493_022249-T1 | |
OS493_022250-T1 | |
OS493_022251-T1 | |
OS493_022252-T1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
OS493_022253-T1 | |
OS493_022254-T1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
OS493_022255-T1 | TRIMERIC INTRACELLULAR CATION CHANNEL |
OS493_022256-T1 | RRNA PROCESSING PROTEIN EBNA1-BINDING PROTEIN-RELATED |
OS493_022257-T1 | CARBOXYLESTERASE |
OS493_022258-T1 | CARBOXYLESTERASE |
OS493_022259-T1 | CARBOXYLESTERASE |
OS493_022260-T1 | LD25575P |
OS493_022261-T1 | |
OS493_022262-T1 | ZINC FINGER PROTEIN DZIP1 |
OS493_022263-T1 | FAS-ASSOCIATED PROTEIN |
OS493_022264-T1 | INTRAFLAGELLAR TRANSPORT PROTEIN 81 HOMOLOG |
OS493_022265-T1 | |
OS493_022266-T1 | FUN14 DOMAIN CONTAINING |
OS493_022267-T1 | CX9C MOTIF-CONTAINING PROTEIN 4 |
OS493_022268-T1 | RIBOSOMAL PROTEIN L2 |