Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_022594-T1 | |
OS493_022595-T1 | |
OS493_022596-T1 | TITIN |
OS493_022597-T1 | |
OS493_022598-T1 | |
OS493_022599-T1 | |
OS493_022600-T1 | |
OS493_022601-T1 | |
OS493_022602-T1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
OS493_022603-T1 | |
OS493_022604-T1 | |
OS493_022605-T1 | |
OS493_022606-T1 | |
OS493_022607-T1 | BASIGIN RELATED |
OS493_022608-T1 | TITIN |
OS493_022609-T1 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
OS493_022610-T1 | |
OS493_022611-T1 | |
OS493_022612-T1 | |
OS493_022613-T1 | |
OS493_022614-T1 | |
OS493_022615-T1 | TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN |
OS493_022616-T1 | TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN |
OS493_022617-T1 | RIBONUCLEASE T2 |
OS493_022618-T1 | |
OS493_022619-T1 | 50S RIBOSOMAL PROTEIN L4 |
OS493_022620-T1 | RNA BINDING PROTEIN |
OS493_022621-T1 | DNA-DIRECTED RNA POLYMERASE II, III |
OS493_022622-T1 | |
OS493_022623-T1 | VISUAL SYSTEM HOMEOBOX 2 |
OS493_022624-T1 | |
OS493_022625-T1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
OS493_022626-T1 | |
OS493_022627-T1 | KINESIN LIGHT CHAIN |
OS493_022628-T1 | MENIN |
OS493_022629-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR |
OS493_022630-T1 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C |
OS493_022631-T1 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C |
OS493_022632-T1 | UPF0696 PROTEIN C11ORF68 |
OS493_022633-T1 | UPF0696 PROTEIN C11ORF68 |
OS493_022634-T1 | UPF0696 PROTEIN C11ORF68 |
OS493_022636-T1 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C |
OS493_022637-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_022639-T1 | TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN |
OS493_022642-T1 | TIGHT JUNCTION-ASSOCIATED PROTEIN 1 |
OS493_022643-T1 | INNER MEMBRANE TRANSPORT PROTEIN YAJR |
OS493_022644-T1 | INSULINOMA-ASSOCIATED 1 |
OS493_022646-T1 | 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED |
OS493_022648-T1 | |
OS493_022649-T1 | SQUAMOUS CELL CARCINOMA ANTIGEN RECOGNISED BY CYTOTOXIC T LYMPHOCYTES |