Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_022650-T1 | GLYCOPROTEIN HORMONE ALPHA-2 |
OS493_022651-T1 | GLYCOPROTEIN HORMONE BETA CHAIN |
OS493_022652-T1 | |
OS493_022653-T1 | |
OS493_022654-T1 | LP21163P |
OS493_022657-T1 | CENTROMERE PROTEIN E |
OS493_022658-T1 | CENTROMERE PROTEIN E |
OS493_022659-T1 | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED |
OS493_022660-T1 | |
OS493_022661-T1 | N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE |
OS493_022662-T1 | |
OS493_022663-T1 | |
OS493_022664-T1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 13 |
OS493_022665-T1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR AT 64C, ISOFORM A |
OS493_022666-T1 | CYSTEINE DESULFURASE |
OS493_022667-T1 | |
OS493_022668-T1 | RIBOSOMAL PROTEIN S6 KINASE |
OS493_022669-T1 | ACTIN |
OS493_022670-T1 | |
OS493_022671-T1 | DOUBLE ZINC RIBBON AND ANKYRIN REPEAT-CONTAINING PROTEIN 1 |
OS493_022672-T1 | |
OS493_022673-T1 | |
OS493_022674-T1 | |
OS493_022675-T1 | |
OS493_022676-T1 | SI:CH211-243P7.3-RELATED |
OS493_022677-T1 | |
OS493_022678-T1 | MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A |
OS493_022679-T1 | TUBULIN |
OS493_022680-T1 | TUBULIN |
OS493_022681-T1 | |
OS493_022682-T1 | UNCHARACTERIZED |
OS493_022683-T1 | PROBABLE MEMBRANE PROTEIN DUF221-RELATED |
OS493_022684-T1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 13 |
OS493_022685-T1 | PINSTRIPE, ISOFORM A |
OS493_022686-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_022689-T1 | AROMATIC AMINO ACID HYDROXYLASE |
OS493_022690-T1 | AROMATIC AMINO ACID HYDROXYLASE |
OS493_022691-T1 | DIACYLGLYCEROL KINASE |
OS493_022692-T1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
OS493_022693-T1 | |
OS493_022695-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_022696-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_022697-T1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_022698-T1 | UNCHARACTERIZED |
OS493_022699-T1 | C5ORF31 |
OS493_022700-T1 | CYCLIC AMP RESPONSE ELEMENT-BINDING PROTEIN A |
OS493_022701-T1 | CYCLIC AMP RESPONSE ELEMENT-BINDING PROTEIN A |
OS493_022702-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
OS493_022703-T1 | OPSIN |
OS493_022704-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |