About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_022705-T1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
OS493_022706-T1DNA2/NAM7 HELICASE FAMILY
OS493_022707-T1CARNITINE O-ACYLTRANSFERASE
OS493_022708-T1
OS493_022710-T1CCR4 NOT-RELATED
OS493_022711-T1SERINE/THREONINE-PROTEIN KINASE
OS493_022712-T1
OS493_022713-T1TRANSMEMBRANE PROTEIN 9 FAMILY MEMBER
OS493_022714-T1BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
OS493_022715-T1
OS493_022716-T1
OS493_022717-T1
OS493_022718-T1RIBOSOMAL PROTEIN L23-RELATED
OS493_022719-T1BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
OS493_022720-T1
OS493_022721-T1BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
OS493_022722-T1BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
OS493_022723-T1RIBULOKINASE
OS493_022724-T1RIBULOKINASE
OS493_022725-T1GERM CELL-LESS PROTEIN
OS493_022726-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G
OS493_022728-T1NUCLEOPORIN NUP37 P37 -RELATED
OS493_022729-T1DUAL SPECIFICITY PROTEIN PHOSPHATASE
OS493_022730-T1ISOBUTYRYL-COA DEHYDROGENASE
OS493_022731-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED
OS493_022732-T1
OS493_022733-T1RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
OS493_022734-T1UNCHARACTERIZED
OS493_022735-T1UNCHARACTERIZED
OS493_022736-T1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
OS493_022738-T1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
OS493_022739-T14.1 G PROTEIN
OS493_022740-T1
OS493_022741-T1MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED
OS493_022742-T1
OS493_022743-T1EXPRESSED PROTEIN
OS493_022744-T1
OS493_022745-T1
OS493_022746-T1
OS493_022747-T1
OS493_022748-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_022749-T1
OS493_022750-T1TRANSALDOLASE
OS493_022751-T1TRANSALDOLASE
OS493_022752-T1ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
OS493_022753-T1BTB/POZ DOMAIN-CONTAINING
OS493_022754-T1FI19480P1
OS493_022755-T1PERFORIN-LIKE PROTEIN 1
OS493_022756-T1TROPOMYOSIN
OS493_022758-T1
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