About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_022868-T1SORTILIN RELATED
OS493_022869-T1SORTILIN RELATED
OS493_022870-T1
OS493_022871-T1LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED
OS493_022872-T1
OS493_022873-T1OCTANOYLTRANSFERASE
OS493_022874-T1COMPONENT OF OLIGOMERIC GOLGI COMPLEX 6
OS493_022875-T1COMPONENT OF OLIGOMERIC GOLGI COMPLEX 6
OS493_022876-T1CALCIUM BINDING PROTEINS
OS493_022878-T1UNCHARACTERIZED
OS493_022879-T1UNCHARACTERIZED
OS493_022880-T1
OS493_022881-T1SORTILIN RELATED
OS493_022882-T1SORTILIN RELATED
OS493_022883-T1LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED
OS493_022884-T1
OS493_022885-T1
OS493_022886-T1CYTOKINE RECEPTOR
OS493_022887-T1SORTILIN RELATED
OS493_022888-T1LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED
OS493_022889-T1RAS-LIKE FAMILY MEMBER 11
OS493_022890-T1CYCLIC NUCLEOTIDE PHOSPHODIESTERASE
OS493_022891-T1PROTOPORPHYRINOGEN OXIDASE
OS493_022892-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_022893-T1F20B24.22
OS493_022894-T1
OS493_022895-T1
OS493_022896-T1
OS493_022897-T1
OS493_022898-T1
OS493_022901-T1
OS493_022902-T1
OS493_022903-T1
OS493_022904-T1
OS493_022905-T1
OS493_022906-T1
OS493_022907-T1
OS493_022908-T1
OS493_022909-T1
OS493_022910-T1
OS493_022911-T1S-FORMYLGLUTATHIONE HYDROLASE
OS493_022912-T1
OS493_022913-T1
OS493_022914-T1RAS GTPASE-ACTIVATING PROTEIN WITH IQ MOTIF
OS493_022915-T1RAS GTPASE-ACTIVATING PROTEIN WITH IQ MOTIF
OS493_022916-T1RAS GTPASE-ACTIVATING PROTEIN WITH IQ MOTIF
OS493_022917-T1SOX TRANSCRIPTION FACTOR
OS493_022918-T1
OS493_022919-T1NUCLEAR MITOTIC APPARATUS PROTEIN 1-RELATED
OS493_022920-T1THREE PRIME REPAIR EXONUCLEASE 1, 2
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