About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_022922-T1
OS493_022923-T1
OS493_022924-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_022925-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_022927-T1MONOCARBOXYLATE TRANSPORTER
OS493_022928-T1MONOCARBOXYLATE TRANSPORTER
OS493_022930-T1MONOCARBOXYLATE TRANSPORTER
OS493_022931-T1MONOCARBOXYLATE TRANSPORTER
OS493_022932-T1VOLTAGE-GATED POTASSIUM CHANNEL
OS493_022933-T1CARBOHYDRATE SULFOTRANSFERASE
OS493_022934-T1
OS493_022935-T12-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2
OS493_022936-T1OCTANOYLTRANSFERASE
OS493_022937-T1OCTANOYLTRANSFERASE
OS493_022938-T1CALCIUM BINDING PROTEINS
OS493_022940-T1UNCHARACTERIZED
OS493_022941-T1SORTILIN RELATED
OS493_022942-T1SORTILIN RELATED
OS493_022943-T1
OS493_022944-T1PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
OS493_022945-T1
OS493_022946-T1
OS493_022947-T1
OS493_022948-T1PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
OS493_022949-T1TRNA PSEUDOURIDINE SYNTHASE D
OS493_022950-T1TRNA PSEUDOURIDINE SYNTHASE D
OS493_022951-T1QUINONE OXIDOREDUCTASE PIG3-RELATED
OS493_022952-T1QUINONE OXIDOREDUCTASE PIG3-RELATED
OS493_022953-T1
OS493_022954-T1G PROTEIN-COUPLED RECEPTOR-RELATED
OS493_022955-T1
OS493_022956-T1
OS493_022957-T1
OS493_022958-T1G PROTEIN-COUPLED RECEPTOR-RELATED
OS493_022959-T1
OS493_022960-T1
OS493_022961-T1AP ENDONUCLEASE
OS493_022962-T1
OS493_022963-T1
OS493_022964-T1
OS493_022965-T1G PROTEIN-COUPLED RECEPTOR-RELATED
OS493_022966-T1
OS493_022967-T1AP ENDONUCLEASE
OS493_022968-T1
OS493_022969-T1
OS493_022970-T1
OS493_022971-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_022972-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_022973-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_022974-T1
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