About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_009533-T1LEUCOKININ RECEPTOR-RELATED
OS493_009534-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_009535-T1-
OS493_009536-T1OS08G0560600 PROTEIN
OS493_009537-T1-
OS493_009538-T1-
OS493_009539-T1SKICH DOMAIN-CONTAINING PROTEIN
OS493_009540-T1RAD50
OS493_009541-T1G-PROTEIN COUPLED RECEPTOR
OS493_009542-T1CLASS II CROSSOVER JUNCTION ENDONUCLEASE MUS81
OS493_009543-T1-
OS493_009544-T1UPF0041 BRAIN PROTEIN 44-RELATED
OS493_009545-T1TRANSMEMBRANE PROTEIN 242
OS493_009546-T1ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN
OS493_009547-T1-
OS493_009548-T1-
OS493_009549-T1ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL
OS493_009550-T1BTK-BINDING PROTEIN-RELATED
OS493_009551-T1-
OS493_009552-T1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
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