Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_023861-T1 | |
OS493_023862-T1 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
OS493_023863-T1 | ARGINYL-TRNA SYNTHETASE |
OS493_023864-T1 | |
OS493_023865-T1 | CYTOSOLIC PHOSPHOLIPASE A2 |
OS493_023866-T1 | CYTOSOLIC PHOSPHOLIPASE A2 |
OS493_023867-T1 | |
OS493_023868-T1 | |
OS493_023869-T1 | - |
OS493_023870-T1 | |
OS493_023871-T1 | |
OS493_023872-T1 | |
OS493_023873-T1 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
OS493_023874-T1 | MITOCHONDRIA-EATING PROTEIN-RELATED |
OS493_023875-T1 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
OS493_023876-T1 | |
OS493_023877-T1 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
OS493_023878-T1 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
OS493_023879-T1 | MITOCHONDRIA-EATING PROTEIN-RELATED |
OS493_023880-T1 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
OS493_023881-T1 | |
OS493_023882-T1 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
OS493_023883-T1 | |
OS493_023884-T1 | MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B |
OS493_023885-T1 | DUAL SPECIFICITY PROTEIN KINASE |
OS493_023886-T1 | DUAL SPECIFICITY PROTEIN KINASE |
OS493_023887-T1 | GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD |
OS493_023888-T1 | GTP-BINDING PROTEIN-RELATED |
OS493_023889-T1 | |
OS493_023890-T1 | |
OS493_023891-T1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
OS493_023892-T1 | |
OS493_023893-T1 | |
OS493_023894-T1 | INTEGRAL TRANSMEMBRANE PROTEIN 2 |
OS493_023895-T1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
OS493_023896-T1 | EXPRESSED PROTEIN |
OS493_023897-T1 | |
OS493_023898-T1 | GASTROKINE 1 |
OS493_023899-T1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
OS493_023900-T1 | GASTROKINE 1 |
OS493_023901-T1 | DIHYDROXY-ACID DEHYDRATASE DAD |
OS493_023902-T1 | DIHYDROXY-ACID DEHYDRATASE DAD |
OS493_023903-T1 | |
OS493_023904-T1 | SERINE PROTEASE |
OS493_023906-T1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
OS493_023907-T1 | CONTACTIN 5 |
OS493_023908-T1 | G PATCH AND KOW-CONTAINING |
OS493_023909-T1 | G PATCH AND KOW-CONTAINING |
OS493_023910-T1 | COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 4 |
OS493_023911-T1 | TATA BOX-BINDING PROTEIN ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT C |