About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_023967-T1
OS493_023969-T1
OS493_023970-T1HISTIDINE-RICH CALCIUM-BINDING PROTEIN-RELATED
OS493_023971-T1ACYLPHOSPHATASE
OS493_023972-T1
OS493_023973-T1WD REPEAT AND HMG-BOX DNA BINDING PROTEIN
OS493_023974-T1WD REPEAT AND HMG-BOX DNA BINDING PROTEIN
OS493_023975-T1WD REPEAT AND HMG-BOX DNA BINDING PROTEIN
OS493_023976-T1
OS493_023977-T1ISLET CELL AUTOANTIGEN 1
OS493_023978-T1S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN
OS493_023979-T1
OS493_023980-T1REGULATOR OF G-PROTEIN SIGNALING 22
OS493_023981-T1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_023982-T1
OS493_023983-T1BTB POZ DOMAIN CONTAINING 7
OS493_023984-T1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
OS493_023985-T1PARATHYROID HORMONE-RESPONSIVE B1 GENE
OS493_023986-T1CROSSVEINLESS 2
OS493_023987-T1
OS493_023988-T1
OS493_023989-T1ADHESION G-PROTEIN COUPLED RECEPTOR
OS493_023990-T1G-PROTEIN COUPLED RECEPTOR
OS493_023991-T1NUCLEAR HORMONE RECEPTOR
OS493_023992-T1NUCLEAR RECEPTOR SUBFAMILY 0 GROUP B
OS493_023993-T1BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED
OS493_023994-T1
OS493_023995-T1
OS493_023996-T1
OS493_023997-T1
OS493_023998-T1OVARIAN CARCINOMA ANTIGEN CA125-RELATED
OS493_023999-T1
OS493_024000-T1USE1-LIKE PROTEIN
OS493_024001-T1ARMADILLO SEGMENT POLARITY PROTEIN
OS493_024002-T1N-ACETYLNEURAMINATE 9-O-ACETYLTRANSFERASE
OS493_024003-T1GLR0591 PROTEIN
OS493_024004-T1ZINC FINGER PROTEIN 200
OS493_024005-T1S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN
OS493_024006-T1S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN
OS493_024007-T1
OS493_024008-T1ISLET CELL AUTOANTIGEN 1
OS493_024009-T1
OS493_024010-T1
OS493_024011-T1
OS493_024012-T1
OS493_024013-T1
OS493_024015-T1
OS493_024016-T1
OS493_024017-T1PROTEIN CBG23806
OS493_024018-T1
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