Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_023967-T1 | |
OS493_023969-T1 | |
OS493_023970-T1 | HISTIDINE-RICH CALCIUM-BINDING PROTEIN-RELATED |
OS493_023971-T1 | ACYLPHOSPHATASE |
OS493_023972-T1 | |
OS493_023973-T1 | WD REPEAT AND HMG-BOX DNA BINDING PROTEIN |
OS493_023974-T1 | WD REPEAT AND HMG-BOX DNA BINDING PROTEIN |
OS493_023975-T1 | WD REPEAT AND HMG-BOX DNA BINDING PROTEIN |
OS493_023976-T1 | |
OS493_023977-T1 | ISLET CELL AUTOANTIGEN 1 |
OS493_023978-T1 | S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
OS493_023979-T1 | |
OS493_023980-T1 | REGULATOR OF G-PROTEIN SIGNALING 22 |
OS493_023981-T1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_023982-T1 | |
OS493_023983-T1 | BTB POZ DOMAIN CONTAINING 7 |
OS493_023984-T1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
OS493_023985-T1 | PARATHYROID HORMONE-RESPONSIVE B1 GENE |
OS493_023986-T1 | CROSSVEINLESS 2 |
OS493_023987-T1 | |
OS493_023988-T1 | |
OS493_023989-T1 | ADHESION G-PROTEIN COUPLED RECEPTOR |
OS493_023990-T1 | G-PROTEIN COUPLED RECEPTOR |
OS493_023991-T1 | NUCLEAR HORMONE RECEPTOR |
OS493_023992-T1 | NUCLEAR RECEPTOR SUBFAMILY 0 GROUP B |
OS493_023993-T1 | BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED |
OS493_023994-T1 | |
OS493_023995-T1 | |
OS493_023996-T1 | |
OS493_023997-T1 | |
OS493_023998-T1 | OVARIAN CARCINOMA ANTIGEN CA125-RELATED |
OS493_023999-T1 | |
OS493_024000-T1 | USE1-LIKE PROTEIN |
OS493_024001-T1 | ARMADILLO SEGMENT POLARITY PROTEIN |
OS493_024002-T1 | N-ACETYLNEURAMINATE 9-O-ACETYLTRANSFERASE |
OS493_024003-T1 | GLR0591 PROTEIN |
OS493_024004-T1 | ZINC FINGER PROTEIN 200 |
OS493_024005-T1 | S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
OS493_024006-T1 | S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
OS493_024007-T1 | |
OS493_024008-T1 | ISLET CELL AUTOANTIGEN 1 |
OS493_024009-T1 | |
OS493_024010-T1 | |
OS493_024011-T1 | |
OS493_024012-T1 | |
OS493_024013-T1 | |
OS493_024015-T1 | |
OS493_024016-T1 | |
OS493_024017-T1 | PROTEIN CBG23806 |
OS493_024018-T1 |