About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_009553-T1CENTROSOMAL PROTEIN OF 162 KDA
OS493_009554-T1SAM-DOMAIN, SH3 AND NUCLEAR LOCALIZATION SIGNALS PROTEIN RELATED
OS493_009555-T1SAM-DOMAIN, SH3 AND NUCLEAR LOCALIZATION SIGNALS PROTEIN RELATED
OS493_009556-T1PEST PROTEOLYTIC SIGNAL-CONTAINING NUCLEAR PROTEIN
OS493_009557-T15-HYDROXYTRYPTAMINE RECEPTOR
OS493_009558-T1PYRROLINE-5-CARBOXYLATE REDUCTASE
OS493_009559-T1BLR2807 PROTEIN
OS493_009560-T1SEC63 DOMAIN-CONTAINING
OS493_009561-T1DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER
OS493_009562-T1LOC100145250 PROTEIN
OS493_009563-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 81
OS493_009564-T1WD REPEAT CONTAINING PROTEIN 3 WDR3
OS493_009565-T1WD REPEAT CONTAINING PROTEIN 3 WDR3
OS493_009566-T1-
OS493_009567-T1UBIQUITIN-CONJUGATING ENZYME E2
OS493_009568-T1-
OS493_009569-T1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS
OS493_009570-T1DYNEIN HEAVY CHAIN FAMILY PROTEIN
OS493_009571-T1DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN
OS493_009572-T1DYNEIN HEAVY CHAIN FAMILY PROTEIN
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