Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_023751-T1 | COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED |
OS493_023752-T1 | |
OS493_023753-T1 | CUBILIN-LIKE PROTEIN |
OS493_023754-T1 | |
OS493_023755-T1 | |
OS493_023756-T1 | AGAP000124-PA |
OS493_023757-T1 | GOLGI MEMBRANE PROTEIN YIP1 |
OS493_023758-T1 | CHLORIDE CHANNEL PROTEIN |
OS493_023759-T1 | |
OS493_023760-T1 | ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED |
OS493_023761-T1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
OS493_023763-T1 | UNCHARACTERIZED |
OS493_023764-T1 | PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN |
OS493_023765-T1 | EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN |
OS493_023766-T1 | HIGH MOBILITY GROUP PROTEIN DSP1 |
OS493_023767-T1 | SAP30 |
OS493_023769-T1 | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE |
OS493_023770-T1 | |
OS493_023771-T1 | FI04643P-RELATED |
OS493_023772-T1 | UBIQUITIN-CONJUGATING ENZYME E2 |
OS493_023773-T1 | AGAP012002-PA |
OS493_023774-T1 | FIBROBLAST GROWTH FACTOR |
OS493_023775-T1 | NEDD4-BINDING PROTEIN 2 |
OS493_023776-T1 | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE |
OS493_023777-T1 | VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL |
OS493_023778-T1 | PLAT DOMAIN-CONTAINING PROTEIN |
OS493_023779-T1 | PROTEIN CBG12474 |
OS493_023780-T1 | VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL |
OS493_023781-T1 | VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL |
OS493_023782-T1 | GLUCOSAMINE-6-PHOSPHATE ISOMERASE |
OS493_023783-T1 | GLUCOSAMINE-6-PHOSPHATE ISOMERASE |
OS493_023784-T1 | BTB POZ DOMAIN CONTAINING 12 |
OS493_023785-T1 | BTB POZ DOMAIN CONTAINING 12 |
OS493_023786-T1 | |
OS493_023787-T1 | BTB POZ DOMAIN CONTAINING 12 |
OS493_023788-T1 | IQ DOMAIN-CONTAINING PROTEIN M |
OS493_023789-T1 | RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER |
OS493_023790-T1 | |
OS493_023791-T1 | JNK/SAPK-ASSOCIATED PROTEIN |
OS493_023792-T1 | JNK/SAPK-ASSOCIATED PROTEIN |
OS493_023793-T1 | JNK/SAPK-ASSOCIATED PROTEIN |
OS493_023794-T1 | |
OS493_023795-T1 | CBP/P300-RELATED |
OS493_023796-T1 | CBP/P300-RELATED |
OS493_023797-T1 | ADENYLATE CYCLASE TYPE 1 |
OS493_023798-T1 | CORONIN |
OS493_023799-T1 | HIGH MOBILITY GROUP PROTEIN 2 |
OS493_023800-T1 | |
OS493_023801-T1 | BARDET-BIEDL SYNDROME 7 PROTEIN |
OS493_023802-T1 |