About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_024181-T1
OS493_024182-T1
OS493_024183-T1
OS493_024184-T1
OS493_024185-T1NF-KAPPA-B INHIBITOR ALPHA
OS493_024186-T1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
OS493_024187-T1SHORT-CHAIN DEHYDROGENASE/REDUCTASE
OS493_024188-T1
OS493_024189-T1LEUCOKININ RECEPTOR-RELATED
OS493_024190-T1PENICILLIN-BINDING PROTEIN
OS493_024191-T1COLLAGEN ALPHA
OS493_024192-T1COLLAGEN ALPHA
OS493_024193-T1COLLAGEN ALPHA
OS493_024194-T140S RIBOSOMAL PROTEIN S19
OS493_024195-T1
OS493_024196-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_024197-T1CENTROSOMAL PROTEIN 2
OS493_024198-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_024199-T1UNCHARACTERIZED
OS493_024200-T1UNCHARACTERIZED
OS493_024201-T1
OS493_024202-T1INTELECTIN
OS493_024203-T1
OS493_024204-T1
OS493_024205-T1CONTACTIN 5
OS493_024207-T1
OS493_024208-T1UNCHARACTERIZED
OS493_024209-T1
OS493_024210-T1GLUTATHIONE REDUCTASE
OS493_024211-T1
OS493_024212-T1
OS493_024213-T1ANKYRIN REPEAT-CONTAINING
OS493_024214-T1
OS493_024215-T1
OS493_024216-T1SH2-SH3 ADAPTOR PROTEIN-RELATED
OS493_024217-T1HOMEOBOX PROTEIN NKX
OS493_024218-T1
OS493_024219-T1HOMEOBOX PROTEIN
OS493_024221-T1
OS493_024222-T1CHYMOTRYPSIN-RELATED
OS493_024223-T1CHYMOTRYPSIN-RELATED
OS493_024224-T1CEH-10 HOMEODOMAIN-CONTAINING HOMOLOG
OS493_024225-T1BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR
OS493_024226-T1DIAMINE N-ACETYLTRANSFERASE
OS493_024227-T1METABOTROPIC GLUTAMATE RECEPTOR
OS493_024228-T1METABOTROPIC GLUTAMATE RECEPTOR
OS493_024229-T1RIBOSOMAL PROTEIN L17
OS493_024230-T1RIBOSOMAL PROTEIN L17
OS493_024231-T1
OS493_024232-T1
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