About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_024233-T1NF-KAPPA-B INHIBITOR ALPHA
OS493_024234-T1
OS493_024235-T1
OS493_024236-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_024237-T1
OS493_024239-T1
OS493_024240-T1
OS493_024241-T1
OS493_024243-T1EXPRESSED PROTEIN
OS493_024244-T1EXPRESSED PROTEIN
OS493_024245-T1
OS493_024246-T1
OS493_024247-T1
OS493_024248-T1VASCULAR CELL ADHESION MOLECULE 1
OS493_024249-T1NEPHRIN
OS493_024250-T1NEPHRIN
OS493_024251-T1
OS493_024252-T1
OS493_024253-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_024254-T1SRCR DOMAIN-CONTAINING PROTEIN
OS493_024255-T1
OS493_024256-T1CONTACTIN 5
OS493_024257-T1CONTACTIN 5
OS493_024258-T1
OS493_024259-T1CONTACTIN 5
OS493_024260-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_024261-T1
OS493_024262-T1CONTACTIN 5
OS493_024264-T1
OS493_024265-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_024266-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_024267-T1CONTACTIN 5
OS493_024268-T1
OS493_024269-T1
OS493_024270-T1
OS493_024271-T1
OS493_024272-T1
OS493_024273-T1
OS493_024274-T1
OS493_024275-T1
OS493_024276-T1MYND-TYPE DOMAIN-CONTAINING PROTEIN
OS493_024277-T1
OS493_024278-T1
OS493_024279-T1
OS493_024280-T1
OS493_024281-T1
OS493_024282-T1EXPRESSED PROTEIN
OS493_024283-T1
OS493_024284-T1
OS493_024285-T1EXPRESSED PROTEIN
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