About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_024397-T1
OS493_024398-T1
OS493_024399-T1
OS493_024400-T1VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN
OS493_024401-T1PROTEIN-TYROSINE SULFOTRANSFERASE 2
OS493_024402-T1HEPARAN SULFATE SULFOTRANSFERASE
OS493_024404-T1HEPARAN SULFATE SULFOTRANSFERASE
OS493_024405-T1
OS493_024406-T1
OS493_024407-T1
OS493_024408-T1CARBOHYDRATE SULFOTRANSFERASE
OS493_024409-T1MPS ONE BINDER KINASE ACTIVATOR-LIKE MOB
OS493_024410-T1V-TYPE PROTON ATPASE SUBUNIT C
OS493_024411-T1NXPE FAMILY MEMBER
OS493_024412-T1
OS493_024413-T1UNCHARACTERIZED
OS493_024414-T1UNCHARACTERIZED
OS493_024415-T1SH3 DOMAIN-CONTAINING
OS493_024416-T1NUCLEAR FUSION PROTEIN FUS2
OS493_024417-T1
OS493_024418-T1
OS493_024419-T1CRUMBS FAMILY MEMBER
OS493_024420-T1
OS493_024421-T1
OS493_024422-T1
OS493_024423-T1
OS493_024424-T1DOPAMINE BETA HYDROXYLASE RELATED
OS493_024425-T1DOPAMINE BETA HYDROXYLASE RELATED
OS493_024426-T1DOPAMINE BETA HYDROXYLASE RELATED
OS493_024427-T1DOPAMINE BETA HYDROXYLASE RELATED
OS493_024428-T1DOPAMINE BETA HYDROXYLASE RELATED
OS493_024430-T1
OS493_024431-T1DOPAMINE BETA HYDROXYLASE RELATED
OS493_024432-T1RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
OS493_024433-T1
OS493_024434-T1
OS493_024435-T1
OS493_024436-T1
OS493_024437-T1
OS493_024438-T1
OS493_024439-T1
OS493_024440-T1
OS493_024441-T1
OS493_024442-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_024443-T1
OS493_024444-T1RAS-LIKE FAMILY MEMBER 11
OS493_024446-T15-HYDROXYTRYPTAMINE RECEPTOR
OS493_024447-T1PYRUVOYL TETRAHYDROBIOPTERIN SYNTHASE
OS493_024448-T1KINESIN-RELATED
OS493_024449-T1
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