About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_024450-T1
OS493_024451-T1
OS493_024452-T1HYPOXIA-INDUCBILE GENE 1 HIG1 -RELATED
OS493_024453-T1CORTACTIN AND DREBRIN
OS493_024454-T1CYTOSINE DEAMINASE FAMILY MEMBER
OS493_024455-T1CYTOSINE DEAMINASE FAMILY MEMBER
OS493_024456-T1CYTOSINE DEAMINASE FAMILY MEMBER
OS493_024457-T1RAS-LIKE FAMILY MEMBER 11
OS493_024458-T1RAS-LIKE FAMILY MEMBER 11
OS493_024459-T1ZGC:174356
OS493_024460-T1ZGC:174356
OS493_024461-T1ZGC:174356
OS493_024462-T1RAS-LIKE FAMILY MEMBER 11
OS493_024463-T1RAS-LIKE FAMILY MEMBER 11
OS493_024464-T1RAS-LIKE FAMILY MEMBER 11
OS493_024465-T1RAS-LIKE FAMILY MEMBER 11
OS493_024466-T1RAS-LIKE FAMILY MEMBER 11
OS493_024467-T1METHIONINE-R-SULFOXIDE REDUCTASE B1
OS493_024468-T1LEUCOKININ RECEPTOR-RELATED
OS493_024469-T1
OS493_024470-T1
OS493_024471-T1
OS493_024472-T1
OS493_024473-T1
OS493_024474-T1
OS493_024475-T1
OS493_024476-T1
OS493_024478-T1
OS493_024479-T1
OS493_024480-T1
OS493_024481-T1ADHESION G-PROTEIN COUPLED RECEPTOR
OS493_024482-T1UNCHARACTERIZED
OS493_024483-T1UNCHARACTERIZED
OS493_024484-T1
OS493_024485-T1
OS493_024487-T1GLUTAMATE CYSTEINE LIGASE
OS493_024489-T1ARYLSULFATASE FAMILY MEMBER
OS493_024491-T1ARYLSULFATASE FAMILY MEMBER
OS493_024492-T1ARYLSULFATASE FAMILY MEMBER
OS493_024493-T1
OS493_024494-T1
OS493_024495-T1
OS493_024496-T1ARYLSULFATASE FAMILY MEMBER
OS493_024497-T1ARYLSULFATASE FAMILY MEMBER
OS493_024498-T1
OS493_024499-T1
OS493_024500-T1
OS493_024501-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT
OS493_024502-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT
OS493_024503-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
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