Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_024557-T1 | SEC10 |
OS493_024561-T1 | UNCHARACTERIZED |
OS493_024562-T1 | UNCHARACTERIZED |
OS493_024563-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_024564-T1 | |
OS493_024565-T1 | |
OS493_024566-T1 | |
OS493_024567-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_024568-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_024569-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_024570-T1 | STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE |
OS493_024571-T1 | ARYLSULFATASE |
OS493_024572-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_024573-T1 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S29 |
OS493_024576-T1 | |
OS493_024577-T1 | POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3 |
OS493_024578-T1 | SHIPPO-1-RELATED |
OS493_024579-T1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
OS493_024580-T1 | GLR0591 PROTEIN |
OS493_024581-T1 | GLR0591 PROTEIN |
OS493_024582-T1 | ADHESION G-PROTEIN COUPLED RECEPTOR V1 |
OS493_024583-T1 | ADHESION G-PROTEIN COUPLED RECEPTOR V1 |
OS493_024584-T1 | ADHESION G-PROTEIN COUPLED RECEPTOR V1 |
OS493_024585-T1 | ADHESION G-PROTEIN COUPLED RECEPTOR V1 |
OS493_024586-T1 | |
OS493_024587-T1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
OS493_024588-T1 | G-PROTEIN COUPLED RECEPTOR |
OS493_024589-T1 | G-PROTEIN COUPLED RECEPTOR |
OS493_024590-T1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
OS493_024591-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_024592-T1 | |
OS493_024593-T1 | |
OS493_024595-T1 | OVOCHYMASE-RELATED |
OS493_024596-T1 | |
OS493_024597-T1 | TRANSIENT RECEPTOR POTENTIAL CHANNEL |
OS493_024598-T1 | |
OS493_024599-T1 | |
OS493_024600-T1 | |
OS493_024601-T1 | TRANSIENT RECEPTOR POTENTIAL CHANNEL |
OS493_024602-T1 | |
OS493_024603-T1 | |
OS493_024604-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
OS493_024605-T1 | |
OS493_024606-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_024607-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_024608-T1 | GABA-B RECEPTOR |
OS493_024609-T1 | DOPEY-RELATED |
OS493_024610-T1 | PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1 |
OS493_024611-T1 | SERINE-THREONINE PROTEIN KINASE |
OS493_024612-T1 | WD REPEAT DOMAIN-CONTAINING FAMILY |