About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_024557-T1SEC10
OS493_024561-T1UNCHARACTERIZED
OS493_024562-T1UNCHARACTERIZED
OS493_024563-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_024564-T1
OS493_024565-T1
OS493_024566-T1
OS493_024567-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_024568-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_024569-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_024570-T1STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
OS493_024571-T1ARYLSULFATASE
OS493_024572-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_024573-T1MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S29
OS493_024576-T1
OS493_024577-T1POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3
OS493_024578-T1SHIPPO-1-RELATED
OS493_024579-T1ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
OS493_024580-T1GLR0591 PROTEIN
OS493_024581-T1GLR0591 PROTEIN
OS493_024582-T1ADHESION G-PROTEIN COUPLED RECEPTOR V1
OS493_024583-T1ADHESION G-PROTEIN COUPLED RECEPTOR V1
OS493_024584-T1ADHESION G-PROTEIN COUPLED RECEPTOR V1
OS493_024585-T1ADHESION G-PROTEIN COUPLED RECEPTOR V1
OS493_024586-T1
OS493_024587-T1ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
OS493_024588-T1G-PROTEIN COUPLED RECEPTOR
OS493_024589-T1G-PROTEIN COUPLED RECEPTOR
OS493_024590-T1ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
OS493_024591-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_024592-T1
OS493_024593-T1
OS493_024595-T1OVOCHYMASE-RELATED
OS493_024596-T1
OS493_024597-T1TRANSIENT RECEPTOR POTENTIAL CHANNEL
OS493_024598-T1
OS493_024599-T1
OS493_024600-T1
OS493_024601-T1TRANSIENT RECEPTOR POTENTIAL CHANNEL
OS493_024602-T1
OS493_024603-T1
OS493_024604-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
OS493_024605-T1
OS493_024606-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_024607-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_024608-T1GABA-B RECEPTOR
OS493_024609-T1DOPEY-RELATED
OS493_024610-T1PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1
OS493_024611-T1SERINE-THREONINE PROTEIN KINASE
OS493_024612-T1WD REPEAT DOMAIN-CONTAINING FAMILY
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