Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_024721-T1 | |
OS493_024722-T1 | |
OS493_024723-T1 | AUTOPHAGY PROTEIN 5 |
OS493_024724-T1 | |
OS493_024725-T1 | |
OS493_024726-T1 | |
OS493_024727-T1 | |
OS493_024728-T1 | |
OS493_024729-T1 | |
OS493_024730-T1 | |
OS493_024731-T1 | |
OS493_024732-T1 | INTEGRATOR COMPLEX SUBUNIT 5 |
OS493_024734-T1 | MITOGUARDIN |
OS493_024735-T1 | LD11652P |
OS493_024736-T1 | BIFUNCTIONAL TH2 PROTEIN |
OS493_024737-T1 | G-PROTEIN COUPLED RECEPTOR |
OS493_024738-T1 | |
OS493_024739-T1 | |
OS493_024740-T1 | MULTI-COPPER OXIDASE |
OS493_024741-T1 | UPF0690 PROTEIN C1ORF52 |
OS493_024742-T1 | TELOMERE LENGTH AND SILENCING PROTEIN 1 TLS1 FAMILY MEMBER |
OS493_024743-T1 | QUEUINE TRNA-RIBOSYLTRANSFERASE CATALYTIC SUBUNIT 1 |
OS493_024744-T1 | GENERAL TRANSCRIPTION FACTOR IIIC, POLYPEPTIDE 5 |
OS493_024745-T1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
OS493_024746-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN 16 |
OS493_024747-T1 | |
OS493_024748-T1 | PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 |
OS493_024749-T1 | UNCHARACTERIZED |
OS493_024750-T1 | UNCHARACTERIZED |
OS493_024751-T1 | CT120 PROTEIN |
OS493_024752-T1 | |
OS493_024753-T1 | DNA REPAIR PROTEIN COMPLEMENTING XP-A CELLS |
OS493_024754-T1 | PETER PAN-RELATED |
OS493_024755-T1 | FLOTILLIN-RELATED |
OS493_024756-T1 | RIBOSOMAL PROTEIN S7 |
OS493_024757-T1 | RIBOSOMAL PROTEIN S7 |
OS493_024758-T1 | |
OS493_024759-T1 | |
OS493_024760-T1 | |
OS493_024761-T1 | CYTOCHROME C |
OS493_024762-T1 | ARP2/3 COMPLEX 16 KD SUBUNIT P16-ARC |
OS493_024764-T1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_024766-T1 | FIBRINOGEN ALPHA CHAIN |
OS493_024767-T1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_024768-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_024769-T1 | HOMEO BOX HB9 LIKE A-RELATED |
OS493_024770-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_024771-T1 | HOMEOBOX PROTEIN NKX |
OS493_024772-T1 | |
OS493_024773-T1 | HOMEO BOX HB9 LIKE A-RELATED |