Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_024774-T1 | HOMEO BOX HB9 LIKE A-RELATED |
OS493_024775-T1 | HOMEO BOX HB9 LIKE A-RELATED |
OS493_024776-T1 | |
OS493_024777-T1 | IP01054P |
OS493_024778-T1 | |
OS493_024779-T1 | |
OS493_024780-T1 | DEOXYHYPUSINE SYNTHASE |
OS493_024781-T1 | UBIQUINONE BIOSYNTHESIS PROTEIN |
OS493_024782-T1 | |
OS493_024783-T1 | |
OS493_024784-T1 | |
OS493_024785-T1 | TESTOSTERONE-REGULATED PROTEIN RP2 |
OS493_024786-T1 | MITOCHONDRIAL RIBOSOMAL PROTEIN S33 |
OS493_024787-T1 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED |
OS493_024788-T1 | COP1-INTERACTIVE PROTEIN 1 |
OS493_024789-T1 | |
OS493_024790-T1 | MYOSIN HEAVY CHAIN, NON-MUSCLE |
OS493_024791-T1 | KRUEPPEL-LIKE TRANSCRIPTION FACTOR |
OS493_024792-T1 | MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED |
OS493_024793-T1 | SNARE-ASSOCIATED PROTEIN SNAPIN |
OS493_024794-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_024795-T1 | |
OS493_024796-T1 | SPINSTER |
OS493_024797-T1 | SLIT HOMOLOG |
OS493_024798-T1 | CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2 |
OS493_024799-T1 | PIKACHURIN-LIKE PROTEIN |
OS493_024800-T1 | |
OS493_024801-T1 | |
OS493_024802-T1 | UNCHARACTERIZED |
OS493_024803-T1 | CT120 PROTEIN |
OS493_024804-T1 | |
OS493_024805-T1 | |
OS493_024806-T1 | CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2 |
OS493_024807-T1 | CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2 |
OS493_024808-T1 | CRUMBS FAMILY MEMBER |
OS493_024809-T1 | |
OS493_024810-T1 | |
OS493_024811-T1 | |
OS493_024812-T1 | PRE-MRNA SPLICING FACTOR |
OS493_024813-T1 | PRE-MRNA SPLICING FACTOR |
OS493_024814-T1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
OS493_024815-T1 | CASEIN KINASE II SUBUNIT BETA |
OS493_024816-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
OS493_024817-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
OS493_024818-T1 | SNRNP CORE PROTEIN FAMILY MEMBER |
OS493_024819-T1 | METALLOPROTEASE TLDD |
OS493_024820-T1 | DYNEIN INTERMEDIATE CHAIN |
OS493_024821-T1 | |
OS493_024822-T1 | IGF-LIKE FAMILY RECEPTOR 1 |
OS493_024823-T1 |