About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_024774-T1HOMEO BOX HB9 LIKE A-RELATED
OS493_024775-T1HOMEO BOX HB9 LIKE A-RELATED
OS493_024776-T1
OS493_024777-T1IP01054P
OS493_024778-T1
OS493_024779-T1
OS493_024780-T1DEOXYHYPUSINE SYNTHASE
OS493_024781-T1UBIQUINONE BIOSYNTHESIS PROTEIN
OS493_024782-T1
OS493_024783-T1
OS493_024784-T1
OS493_024785-T1TESTOSTERONE-REGULATED PROTEIN RP2
OS493_024786-T1MITOCHONDRIAL RIBOSOMAL PROTEIN S33
OS493_024787-T1PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED
OS493_024788-T1COP1-INTERACTIVE PROTEIN 1
OS493_024789-T1
OS493_024790-T1MYOSIN HEAVY CHAIN, NON-MUSCLE
OS493_024791-T1KRUEPPEL-LIKE TRANSCRIPTION FACTOR
OS493_024792-T1MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED
OS493_024793-T1SNARE-ASSOCIATED PROTEIN SNAPIN
OS493_024794-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_024795-T1
OS493_024796-T1SPINSTER
OS493_024797-T1SLIT HOMOLOG
OS493_024798-T1CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
OS493_024799-T1PIKACHURIN-LIKE PROTEIN
OS493_024800-T1
OS493_024801-T1
OS493_024802-T1UNCHARACTERIZED
OS493_024803-T1CT120 PROTEIN
OS493_024804-T1
OS493_024805-T1
OS493_024806-T1CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
OS493_024807-T1CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
OS493_024808-T1CRUMBS FAMILY MEMBER
OS493_024809-T1
OS493_024810-T1
OS493_024811-T1
OS493_024812-T1PRE-MRNA SPLICING FACTOR
OS493_024813-T1PRE-MRNA SPLICING FACTOR
OS493_024814-T1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
OS493_024815-T1CASEIN KINASE II SUBUNIT BETA
OS493_024816-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_024817-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_024818-T1SNRNP CORE PROTEIN FAMILY MEMBER
OS493_024819-T1METALLOPROTEASE TLDD
OS493_024820-T1DYNEIN INTERMEDIATE CHAIN
OS493_024821-T1
OS493_024822-T1IGF-LIKE FAMILY RECEPTOR 1
OS493_024823-T1
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