About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_024824-T1COFILIN-RELATED
OS493_024825-T1ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1
OS493_024826-T1I-KAPPA-B-LIKE PROTEIN IKBL
OS493_024827-T1ZINC FINGER MYND DOMAIN-CONTAINING PROTEIN 19
OS493_024828-T1LIM/HOMEOBOX PROTEIN LHX
OS493_024829-T1SERINE/THREONINE-PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 10-RELATED
OS493_024830-T1
OS493_024831-T1
OS493_024832-T1
OS493_024833-T1
OS493_024834-T1
OS493_024835-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_024836-T1NICALIN
OS493_024837-T1
OS493_024838-T1PURPLE ACID PHOSPHATASE
OS493_024839-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_024840-T1MACROGLOBULIN / COMPLEMENT
OS493_024841-T1MACROGLOBULIN / COMPLEMENT
OS493_024842-T1MACROGLOBULIN / COMPLEMENT
OS493_024843-T1MACROGLOBULIN / COMPLEMENT
OS493_024844-T1MACROGLOBULIN / COMPLEMENT
OS493_024845-T1MACROGLOBULIN / COMPLEMENT
OS493_024846-T1
OS493_024847-T1
OS493_024848-T1-
OS493_024849-T14.1 G PROTEIN
OS493_024850-T1MUCOSA ASSOCIATED LYMPHOID TISSUE LYMPHOMA TRANSLOCATION PROTEIN 1/PARACASPASE
OS493_024852-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_024853-T1MUCOSA ASSOCIATED LYMPHOID TISSUE LYMPHOMA TRANSLOCATION PROTEIN 1/PARACASPASE
OS493_024854-T1GLUCONOKINASE-RELATED
OS493_024855-T14.1 G PROTEIN
OS493_024856-T1
OS493_024857-T1NUDIX HYDROLASE RELATED
OS493_024858-T1PHOSPHATIDYLCHOLINE TRANSFER PROTEIN
OS493_024859-T1TRANSLATION ELONGATION FACTOR-RELATED
OS493_024860-T1BONUS, ISOFORM C-RELATED
OS493_024861-T1PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED
OS493_024862-T1NADH DEHYDROGENASE UBIQUINONE 1 ALPHA SUBCOMPLEX SUBUNIT 13
OS493_024863-T1TESTIS-EXPRESSED PROTEIN 45
OS493_024864-T1PCNA-ASSOCIATED FACTOR
OS493_024865-T1CASEIN KINASE-RELATED
OS493_024866-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 171
OS493_024867-T1WNT RELATED
OS493_024868-T1CENTROMERE PROTEIN H
OS493_024869-T1TUBULIN POLYGLUTAMYLASE COMPLEX SUBUNIT 2
OS493_024870-T1
OS493_024871-T1UNCHARACTERIZED
OS493_024872-T1
OS493_024873-T1BRAKELESS PROTEIN
OS493_024874-T1SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
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