Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_024875-T1 | |
OS493_024876-T1 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
OS493_024877-T1 | |
OS493_024878-T1 | LATROPHILIN RECEPTOR-LIKE PROTEIN A |
OS493_024879-T1 | |
OS493_024880-T1 | LATROPHILIN RECEPTOR-LIKE PROTEIN A |
OS493_024881-T1 | LATROPHILIN RECEPTOR-LIKE PROTEIN A |
OS493_024882-T1 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
OS493_024883-T1 | N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE |
OS493_024884-T1 | |
OS493_024885-T1 | N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE |
OS493_024886-T1 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C |
OS493_024888-T1 | LEUCINE RICH REPEAT FAMILY PROTEIN |
OS493_024889-T1 | |
OS493_024890-T1 | LATROPHILIN RECEPTOR-LIKE PROTEIN A |
OS493_024892-T1 | |
OS493_024893-T1 | |
OS493_024894-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 180 |
OS493_024895-T1 | CHITINASE |
OS493_024896-T1 | CHITINASE |
OS493_024897-T1 | CHITINASE |
OS493_024898-T1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
OS493_024899-T1 | |
OS493_024900-T1 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C |
OS493_024901-T1 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C |
OS493_024902-T1 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C |
OS493_024903-T1 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C |
OS493_024904-T1 | |
OS493_024905-T1 | |
OS493_024906-T1 | PLEKHH PROTEIN |
OS493_024907-T1 | PLEKHH PROTEIN |
OS493_024908-T1 | |
OS493_024909-T1 | PLEKHH PROTEIN |
OS493_024910-T1 | AB HYDROLASE SUPERFAMILY PROTEIN C4A8.06C |
OS493_024911-T1 | S -2-HYDROXY-ACID OXIDASE-RELATED |
OS493_024912-T1 | UNCHARACTERIZED |
OS493_024913-T1 | |
OS493_024914-T1 | NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED |
OS493_024915-T1 | CENTROSOMAL PROTEIN KIZUNA |
OS493_024916-T1 | |
OS493_024917-T1 | CENTROSOMAL PROTEIN KIZUNA |
OS493_024918-T1 | COLLAGEN ALPHA |
OS493_024919-T1 | |
OS493_024920-T1 | |
OS493_024921-T1 | PROTEASE U48 CAAX PRENYL PROTEASE RCE1 |
OS493_024922-T1 | GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE |
OS493_024923-T1 | |
OS493_024924-T1 | CALPONIN |
OS493_024925-T1 | |
OS493_024926-T1 | DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER |