About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_024875-T1
OS493_024876-T1APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
OS493_024877-T1
OS493_024878-T1LATROPHILIN RECEPTOR-LIKE PROTEIN A
OS493_024879-T1
OS493_024880-T1LATROPHILIN RECEPTOR-LIKE PROTEIN A
OS493_024881-T1LATROPHILIN RECEPTOR-LIKE PROTEIN A
OS493_024882-T1APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
OS493_024883-T1N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE
OS493_024884-T1
OS493_024885-T1N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE
OS493_024886-T1SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C
OS493_024888-T1LEUCINE RICH REPEAT FAMILY PROTEIN
OS493_024889-T1
OS493_024890-T1LATROPHILIN RECEPTOR-LIKE PROTEIN A
OS493_024892-T1
OS493_024893-T1
OS493_024894-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 180
OS493_024895-T1CHITINASE
OS493_024896-T1CHITINASE
OS493_024897-T1CHITINASE
OS493_024898-T1ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
OS493_024899-T1
OS493_024900-T1SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C
OS493_024901-T1SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C
OS493_024902-T1SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C
OS493_024903-T1SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C
OS493_024904-T1
OS493_024905-T1
OS493_024906-T1PLEKHH PROTEIN
OS493_024907-T1PLEKHH PROTEIN
OS493_024908-T1
OS493_024909-T1PLEKHH PROTEIN
OS493_024910-T1AB HYDROLASE SUPERFAMILY PROTEIN C4A8.06C
OS493_024911-T1S -2-HYDROXY-ACID OXIDASE-RELATED
OS493_024912-T1UNCHARACTERIZED
OS493_024913-T1
OS493_024914-T1NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED
OS493_024915-T1CENTROSOMAL PROTEIN KIZUNA
OS493_024916-T1
OS493_024917-T1CENTROSOMAL PROTEIN KIZUNA
OS493_024918-T1COLLAGEN ALPHA
OS493_024919-T1
OS493_024920-T1
OS493_024921-T1PROTEASE U48 CAAX PRENYL PROTEASE RCE1
OS493_024922-T1GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE
OS493_024923-T1
OS493_024924-T1CALPONIN
OS493_024925-T1
OS493_024926-T1DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER
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