Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_025033-T1 | |
OS493_025034-T1 | TNF RECEPTOR ASSOCIATED FACTOR |
OS493_025035-T1 | |
OS493_025036-T1 | |
OS493_025037-T1 | |
OS493_025038-T1 | |
OS493_025039-T1 | |
OS493_025041-T1 | HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED |
OS493_025042-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
OS493_025043-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
OS493_025044-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
OS493_025046-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
OS493_025047-T1 | |
OS493_025048-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
OS493_025049-T1 | ARMADILLO-LIKE HELICAL DOMAIN CONTAINING PROTEIN 1 |
OS493_025050-T1 | |
OS493_025051-T1 | SPINDLE AND CENTRIOLE ASSOCIATED PROTEIN 1 SPICE1 |
OS493_025052-T1 | SIGNAL RECOGNITION PARTICLE 19 KD PROTEIN |
OS493_025053-T1 | CENTROSOMAL PROTEIN OF 78 KDA |
OS493_025054-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
OS493_025055-T1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
OS493_025056-T1 | |
OS493_025057-T1 | |
OS493_025058-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_025059-T1 | MULTIPLE PDZ DOMAIN PROTEIN |
OS493_025060-T1 | |
OS493_025061-T1 | |
OS493_025064-T1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 14 |
OS493_025065-T1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 14 |
OS493_025066-T1 | |
OS493_025067-T1 | |
OS493_025068-T1 | N-LINKED OLIGOSACCHARIDE PROCESSING |
OS493_025069-T1 | HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN |
OS493_025070-T1 | KINESIN-RELATED PROTEIN 6 |
OS493_025072-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
OS493_025073-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
OS493_025074-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
OS493_025075-T1 | LEG1 |
OS493_025076-T1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
OS493_025077-T1 | |
OS493_025078-T1 | MULTI-COPPER OXIDASE |
OS493_025079-T1 | OS02G0815200 PROTEIN |
OS493_025082-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
OS493_025084-T1 | |
OS493_025085-T1 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
OS493_025086-T1 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
OS493_025087-T1 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
OS493_025088-T1 | NANOS PROTEIN |
OS493_025089-T1 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
OS493_025090-T1 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |