Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_025091-T1 | |
OS493_025092-T1 | |
OS493_025093-T1 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
OS493_025094-T1 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
OS493_025095-T1 | UV EXCISION REPAIR PROTEIN RAD23 |
OS493_025096-T1 | |
OS493_025097-T1 | SERINE/THREONINE-PROTEIN KINASE PLK |
OS493_025098-T1 | SERINE/THREONINE-PROTEIN KINASE PLK |
OS493_025099-T1 | SERINE/THREONINE-PROTEIN KINASE PLK |
OS493_025100-T1 | MYOTROPHIN |
OS493_025101-T1 | UNCHARACTERIZED |
OS493_025102-T1 | CHIMERIN FAMILY MEMBER |
OS493_025103-T1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED |
OS493_025104-T1 | COMM DOMAIN CONTAINING PROTEIN 2 |
OS493_025105-T1 | CELL DIVISION CYCLE 16,23,27 |
OS493_025106-T1 | CELL DIVISION CYCLE 16,23,27 |
OS493_025107-T1 | PID DOMAIN-CONTAINING PROTEIN |
OS493_025108-T1 | |
OS493_025109-T1 | CRSP70 |
OS493_025110-T1 | ANKYRIN REPEAT FAMILY PROTEIN |
OS493_025111-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
OS493_025112-T1 | |
OS493_025113-T1 | MOLTING PROTEIN MLT-4 |
OS493_025114-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
OS493_025115-T1 | |
OS493_025116-T1 | |
OS493_025117-T1 | |
OS493_025118-T1 | |
OS493_025119-T1 | UNCHARACTERIZED |
OS493_025120-T1 | ANKYRIN REPEAT, SAM AND BASIC LEUCINE ZIPPER DOMAIN-CONTAINING PROTEIN 1 |
OS493_025121-T1 | MYOTROPHIN |
OS493_025122-T1 | NADH-CYTOCHROME B5 REDUCTASE |
OS493_025123-T1 | |
OS493_025124-T1 | |
OS493_025125-T1 | ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING |
OS493_025126-T1 | BETA-ALA-HIS DIPEPTIDASE |
OS493_025127-T1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
OS493_025128-T1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
OS493_025129-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_025130-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_025131-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_025133-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_025134-T1 | |
OS493_025135-T1 | |
OS493_025136-T1 | PROPERDIN |
OS493_025137-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_025138-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_025139-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_025140-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_025141-T1 | MULTICOPPER OXIDASE-RELATED |