Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_026171-T1 | GAMMA TUBULIN COMPLEX PROTEIN |
OS493_026172-T1 | |
OS493_026173-T1 | TRANSMEMBRANE PROTEIN FAM155 |
OS493_026174-T1 | |
OS493_026175-T1 | COLLAGEN ALPHA |
OS493_026176-T1 | COLLAGEN ALPHA |
OS493_026177-T1 | COLLAGEN ALPHA |
OS493_026178-T1 | NEURON-DERIVED NEUROTROPHIC FACTOR |
OS493_026179-T1 | UNCHARACTERIZED PROTEASOME COMPONENT REGION PCI-CONTAINING |
OS493_026180-T1 | TUBULIN |
OS493_026181-T1 | AAA-FAMILY ATPASE |
OS493_026182-T1 | AAA-FAMILY ATPASE |
OS493_026183-T1 | |
OS493_026184-T1 | RIBONUCLEASE P PROTEIN SUBUNIT P38 |
OS493_026185-T1 | |
OS493_026186-T1 | C13ORF1 PROTEIN-RELATED |
OS493_026187-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2A |
OS493_026188-T1 | UNCHARACTERIZED |
OS493_026189-T1 | |
OS493_026190-T1 | |
OS493_026191-T1 | |
OS493_026193-T1 | RNA PROCESSING PROTEIN LD23810P |
OS493_026194-T1 | DOUBLESEX AND MAB-3 RELATED TRANSCRIPTION FACTOR DMRT |
OS493_026195-T1 | TATD FAMILY DEOXYRIBONUCLEASE |
OS493_026196-T1 | |
OS493_026197-T1 | DNA-REPAIR PROTEIN XRCC1 |
OS493_026198-T1 | ZINC FINGER PROTEIN WITH KRAB AND SCAN DOMAINS |
OS493_026199-T1 | ZINC FINGER PROTEIN WITH KRAB AND SCAN DOMAINS |
OS493_026200-T1 | UNCHARACTERIZED |
OS493_026201-T1 | MUSCLEBLIND-LIKE PROTEIN |
OS493_026202-T1 | |
OS493_026203-T1 | |
OS493_026204-T1 | TNF RECEPTOR ASSOCIATED FACTOR |
OS493_026205-T1 | - |
OS493_026206-T1 | GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED |
OS493_026207-T1 | CENTROMERE PROTEIN U |
OS493_026208-T1 | |
OS493_026209-T1 | |
OS493_026210-T1 | CHROMOSOME 20 ORF85 FAMILY MEMBER |
OS493_026211-T1 | TRANSLATION FACTOR |
OS493_026212-T1 | AP-5 COMPLEX SUBUNIT SIGMA-1 |
OS493_026213-T1 | - |
OS493_026214-T1 | - |
OS493_026215-T1 | |
OS493_026216-T1 | |
OS493_026217-T1 | |
OS493_026218-T1 | |
OS493_026219-T1 | |
OS493_026220-T1 | |
OS493_026221-T1 |