Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_026377-T1 | |
OS493_026378-T1 | |
OS493_026379-T1 | |
OS493_026380-T1 | |
OS493_026381-T1 | NETRIN/LAMININ-RELATED |
OS493_026382-T1 | NETRIN/LAMININ-RELATED |
OS493_026383-T1 | |
OS493_026384-T1 | 3'-5' EXONUCLEASE DOMAIN-CONTAINING PROTEIN |
OS493_026385-T1 | |
OS493_026386-T1 | |
OS493_026387-T1 | MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED |
OS493_026388-T1 | |
OS493_026390-T1 | TRANSIENT RECEPTOR POTENTIAL CHANNEL |
OS493_026391-T1 | |
OS493_026392-T1 | METABOTROPIC GLUTAMATE RECEPTOR |
OS493_026393-T1 | |
OS493_026394-T1 | TRANSCRIPTION FACTOR-LIKE 5 PROTEIN |
OS493_026395-T1 | XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED |
OS493_026396-T1 | TRNA (GUANINE-9-) METHYLTRANSFERASE |
OS493_026397-T1 | ACTIN |
OS493_026398-T1 | ACTIN |
OS493_026399-T1 | SMG-7 SUPPRESSOR WITH MORPHOLOGICAL EFFECT ON GENITALIA PROTEIN 7 |
OS493_026400-T1 | LAMGL DOMAIN-CONTAINING PROTEIN |
OS493_026401-T1 | LAMGL DOMAIN-CONTAINING PROTEIN |
OS493_026402-T1 | GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT |
OS493_026403-T1 | SCY1-RELATED S/T PROTEIN KINASE-LIKE |
OS493_026404-T1 | |
OS493_026405-T1 | SARCOMA ANTIGEN NY-SAR-24/CYTOSKELETAL PROTEIN SOJO |
OS493_026406-T1 | |
OS493_026407-T1 | RIBOSOMAL PROTEIN L5-RELATED |
OS493_026408-T1 | DED DOMAIN-CONTAINING PROTEIN |
OS493_026409-T1 | DIMETHYLANILINE MONOOXYGENASE |
OS493_026410-T1 | |
OS493_026413-T1 | DIMETHYLANILINE MONOOXYGENASE |
OS493_026414-T1 | DIMETHYLANILINE MONOOXYGENASE |
OS493_026415-T1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_026416-T1 | DYNACTIN 1-RELATED MICROTUBULE-BINDING |
OS493_026417-T1 | ANKYRIN REPEAT PROTEIN |
OS493_026418-T1 | |
OS493_026419-T1 | |
OS493_026420-T1 | |
OS493_026421-T1 | |
OS493_026422-T1 | ANKYRIN REPEAT AND EF-HAND DOMAIN-CONTAINING PROTEIN 1 |
OS493_026423-T1 | SYNDROMES PUTATIVE CHAPERONIN-RELATED |
OS493_026424-T1 | 30S RIBOSOMAL PROTEIN S16 |
OS493_026425-T1 | ENOYL-COA HYDRATASE-RELATED |
OS493_026427-T1 | |
OS493_026429-T1 | SORTING NEXIN |
OS493_026430-T1 | |
OS493_026431-T1 |