About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_026556-T1TETRATRICOPEPTIDE REPEAT PROTEIN 39 FAMILY MEMBER
OS493_026557-T1TETRATRICOPEPTIDE REPEAT PROTEIN 39 FAMILY MEMBER
OS493_026558-T1
OS493_026559-T1
OS493_026560-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
OS493_026561-T1
OS493_026562-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
OS493_026563-T1
OS493_026564-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
OS493_026565-T1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
OS493_026566-T1
OS493_026567-T1SIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING
OS493_026568-T1
OS493_026569-T1
OS493_026570-T1
OS493_026572-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
OS493_026573-T1CONTACTIN 5
OS493_026574-T1METHYLTRANSFERASE LIKE 7B
OS493_026575-T1RAI16 PROTEIN-RELATED
OS493_026576-T1LEUCOKININ RECEPTOR-RELATED
OS493_026577-T1
OS493_026578-T1
OS493_026579-T1AMINO ACID TRANSPORTER
OS493_026580-T160S/50S RIBOSOMAL PROTEIN L6/L9
OS493_026581-T1E3 UBIQUITIN-PROTEIN LIGASE ATL42
OS493_026582-T1
OS493_026583-T1
OS493_026584-T1STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
OS493_026585-T1STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
OS493_026586-T1
OS493_026587-T1METHYLTRANSFERASE LIKE 7B
OS493_026588-T1HISTONE-LYSINE N-METHYLTRANSFERASE-RELATED
OS493_026589-T1
OS493_026590-T1
OS493_026591-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_026592-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_026593-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_026594-T1-
OS493_026595-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_026596-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_026597-T1FIBRILLIN-RELATED
OS493_026598-T1SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
OS493_026599-T1ZGC:158260
OS493_026600-T1NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1
OS493_026601-T1
OS493_026602-T1UBX-RELATED
OS493_026603-T130S/40S RIBOSOMAL PROTEIN S3
OS493_026604-T130S/40S RIBOSOMAL PROTEIN S3
OS493_026605-T1NADP-SPECIFIC GLUTAMATE DEHYDROGENASE 1-RELATED
OS493_026606-T1ATP-DEPENDENT CLP PROTEASE
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