Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_026556-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN 39 FAMILY MEMBER |
OS493_026557-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN 39 FAMILY MEMBER |
OS493_026558-T1 | |
OS493_026559-T1 | |
OS493_026560-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
OS493_026561-T1 | |
OS493_026562-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
OS493_026563-T1 | |
OS493_026564-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
OS493_026565-T1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
OS493_026566-T1 | |
OS493_026567-T1 | SIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING |
OS493_026568-T1 | |
OS493_026569-T1 | |
OS493_026570-T1 | |
OS493_026572-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
OS493_026573-T1 | CONTACTIN 5 |
OS493_026574-T1 | METHYLTRANSFERASE LIKE 7B |
OS493_026575-T1 | RAI16 PROTEIN-RELATED |
OS493_026576-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_026577-T1 | |
OS493_026578-T1 | |
OS493_026579-T1 | AMINO ACID TRANSPORTER |
OS493_026580-T1 | 60S/50S RIBOSOMAL PROTEIN L6/L9 |
OS493_026581-T1 | E3 UBIQUITIN-PROTEIN LIGASE ATL42 |
OS493_026582-T1 | |
OS493_026583-T1 | |
OS493_026584-T1 | STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE |
OS493_026585-T1 | STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE |
OS493_026586-T1 | |
OS493_026587-T1 | METHYLTRANSFERASE LIKE 7B |
OS493_026588-T1 | HISTONE-LYSINE N-METHYLTRANSFERASE-RELATED |
OS493_026589-T1 | |
OS493_026590-T1 | |
OS493_026591-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_026592-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_026593-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_026594-T1 | - |
OS493_026595-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_026596-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_026597-T1 | FIBRILLIN-RELATED |
OS493_026598-T1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
OS493_026599-T1 | ZGC:158260 |
OS493_026600-T1 | NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 |
OS493_026601-T1 | |
OS493_026602-T1 | UBX-RELATED |
OS493_026603-T1 | 30S/40S RIBOSOMAL PROTEIN S3 |
OS493_026604-T1 | 30S/40S RIBOSOMAL PROTEIN S3 |
OS493_026605-T1 | NADP-SPECIFIC GLUTAMATE DEHYDROGENASE 1-RELATED |
OS493_026606-T1 | ATP-DEPENDENT CLP PROTEASE |