About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_026607-T1VACUOLAR ATPASE ASSEMBLY INTEGRAL MEMBRANE PROTEIN VMA21
OS493_026608-T1
OS493_026609-T1ACYL-COA SYNTHETASE
OS493_026610-T1ACYL-COA SYNTHETASE
OS493_026611-T1ACYL-COA SYNTHETASE
OS493_026612-T1
OS493_026613-T1LIM DOMAIN-CONTAINING PROTEIN
OS493_026614-T1LIM DOMAIN-CONTAINING PROTEIN
OS493_026615-T1PROTEIN-TYROSINE SULFOTRANSFERASE 2
OS493_026616-T1LIM DOMAIN-CONTAINING PROTEIN
OS493_026617-T1NF-KAPPA-B ESSENTIAL MODULATOR
OS493_026618-T1NF-KAPPA-B ESSENTIAL MODULATOR
OS493_026619-T1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
OS493_026620-T1
OS493_026621-T1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
OS493_026622-T1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
OS493_026623-T1T-BOX PROTEIN-RELATED
OS493_026624-T1BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
OS493_026625-T1BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
OS493_026626-T1BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED
OS493_026628-T1CENTROSOMAL PROTEIN CEP135
OS493_026629-T1CENTROSOMAL PROTEIN CEP135
OS493_026630-T1CENTROSOMAL PROTEIN CEP135
OS493_026631-T1GUANYL-NUCLEOTIDE EXCHANGE FACTOR
OS493_026632-T1GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2
OS493_026633-T1GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2
OS493_026634-T1
OS493_026635-T1
OS493_026636-T1GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2
OS493_026637-T1GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2
OS493_026638-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_026639-T1GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2
OS493_026640-T1LUPUS LA PROTEIN-RELATED
OS493_026641-T1KINASE D-INTERACTING SUBSTRATE OF 220 KDA
OS493_026642-T1KINASE D-INTERACTING SUBSTRATE OF 220 KDA
OS493_026643-T1KINASE D-INTERACTING SUBSTRATE OF 220 KDA
OS493_026644-T1P PROTEIN
OS493_026645-T1
OS493_026646-T1UNCHARACTERIZED
OS493_026647-T1
OS493_026648-T1G-PROTEIN COUPLED RECEPTOR
OS493_026649-T1LEUCOKININ RECEPTOR-RELATED
OS493_026650-T1G-PROTEIN COUPLED RECEPTOR
OS493_026651-T1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
OS493_026652-T1
OS493_026653-T1FI04643P-RELATED
OS493_026654-T1FI04643P-RELATED
OS493_026655-T1
OS493_026656-T1ANTHRAX TOXIN RECEPTOR
OS493_026657-T1SIGNAL RECOGNITION PARTICLE 68 KDA PROTEIN
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