About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_026917-T1
OS493_026918-T1TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
OS493_026919-T1TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
OS493_026920-T1
OS493_026921-T1
OS493_026922-T1ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE
OS493_026923-T1ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE
OS493_026924-T1
OS493_026925-T1ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE
OS493_026926-T1
OS493_026927-T1DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER
OS493_026928-T1ZINC FINGER PROTEIN 622
OS493_026929-T1UNCHARACTERIZED
OS493_026930-T1UBX DOMAIN-CONTAINING PROTEIN 4
OS493_026931-T1UBX DOMAIN-CONTAINING PROTEIN 4
OS493_026932-T1UBX DOMAIN-CONTAINING PROTEIN 4
OS493_026933-T1TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
OS493_026934-T1ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE
OS493_026935-T1
OS493_026936-T1
OS493_026937-T1METHYLTRANSFERASE
OS493_026938-T1STEROIDOGENIC ACUTE REGULATORY PROTEIN-LIKE
OS493_026939-T1
OS493_026940-T1SERINE PROTEASE INHIBITOR
OS493_026941-T1
OS493_026942-T1NON-HOMOLOGOUS END-JOINING FACTOR 1
OS493_026943-T1HEDGEHOG
OS493_026944-T1
OS493_026945-T1
OS493_026946-T1EXPRESSED PROTEIN
OS493_026947-T1C5ORF31
OS493_026948-T1C5ORF31
OS493_026949-T1MYD88
OS493_026950-T13-HYDROXYISOBUTYRYL-COA HYDROLASE-RELATED
OS493_026951-T1SUPEROXIDE DISMUTASE 2
OS493_026952-T1PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1
OS493_026953-T1SMAD
OS493_026954-T1HL01030P-RELATED
OS493_026955-T1
OS493_026956-T1HL01030P-RELATED
OS493_026958-T1
OS493_026959-T1MYD88
OS493_026960-T13-HYDROXYISOBUTYRYL-COA HYDROLASE-RELATED
OS493_026961-T1CYTOCHROME P450 FAMILY 3
OS493_026962-T1CYTOCHROME P450
OS493_026963-T1CYTOCHROME P450 FAMILY 3
OS493_026964-T1
OS493_026966-T1CYTOCHROME P450 FAMILY 3
OS493_026967-T1CYTOCHROME P450 FAMILY 3
OS493_026968-T1TUBULIN
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