About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_027024-T1
OS493_027025-T1
OS493_027026-T1
OS493_027027-T1
OS493_027028-T1APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
OS493_027029-T1APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
OS493_027030-T1APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
OS493_027031-T1APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
OS493_027032-T1
OS493_027033-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 138
OS493_027034-T1
OS493_027035-T1AMINO ACID TRANSPORTER
OS493_027037-T1G PROTEIN-COUPLED RECEPTOR
OS493_027038-T1DNA POLYMERASE TYPE-X FAMILY MEMBER
OS493_027039-T1PYRAZINAMIDASE/NICOTINAMIDASE
OS493_027040-T1PYRAZINAMIDASE/NICOTINAMIDASE
OS493_027041-T1
OS493_027042-T1RNA AND EXPORT FACTOR BINDING PROTEIN
OS493_027043-T1TRANSMEMBRANE PROTEIN 33
OS493_027044-T1
OS493_027045-T1CD59 GLYCOPROTEIN
OS493_027046-T1L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+))
OS493_027047-T1DACHSHUND
OS493_027048-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 138
OS493_027049-T1CADHERIN-23
OS493_027050-T1CADHERIN-23
OS493_027051-T1WD REPEAT-CONTAINING PROTEIN 17
OS493_027052-T1WD REPEAT-CONTAINING PROTEIN 17
OS493_027053-T1
OS493_027054-T1CADHERIN-23
OS493_027055-T1
OS493_027056-T1ATP-DEPENDENT (S)-NAD(P)H-HYDRATE DEHYDRATASE FAMILY MEMBER
OS493_027057-T1
OS493_027058-T1
OS493_027059-T1
OS493_027060-T1TUMOR NECROSIS FACTOR RECEPTOR
OS493_027061-T1
OS493_027062-T1
OS493_027063-T1
OS493_027064-T1
OS493_027065-T1TUMOR NECROSIS FACTOR RECEPTOR
OS493_027066-T1TNFR-CYS DOMAIN-CONTAINING PROTEIN
OS493_027067-T1
OS493_027068-T1
OS493_027069-T1
OS493_027070-T1
OS493_027071-T1
OS493_027072-T1
OS493_027073-T1
OS493_027074-T1TUMOR NECROSIS FACTOR RECEPTOR
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